Molecular Endocrinology, doi:10.1210/me.2004-0132
Molecular Endocrinology 18 (10): 2378-2387
Copyright © 2004 by The Endocrine Society
Identification of Liver Receptor Homolog-1 as a Novel Regulator of Apolipoprotein AI Gene Transcription
Philippe Delerive,
Cristin M. Galardi,
John E. Bisi,
Edwige Nicodeme and
Bryan Goodwin
GlaxoSmithKline (P.D., E.N.), Cardiovascular & Urogenital Center of Excellence for Drug Discovery, 91951 Les Ulis, France; GlaxoSmithKline, High Throughput Biology (C.M.G., B.G.), and Gene Interference Group (J.E.B.), Research Triangle Park, North Carolina 27709
Address all correspondence and requests for reprints to: Philippe Delerive, GlaxoSmithKline Research and Development, Cardiovascular and Urogenital Diseases Center of Excellence for Drug Discovery, 25 Avenue du Quebec, 91951 Les Ulis, France. E-mail: pxd14884{at}gsk.com.
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ABSTRACT
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The orphan nuclear receptor liver receptor homolog-1 (LRH-1) has been reported to play a role in bile acid biosynthesis and reverse cholesterol transport. In this study, we examined the role of LRH-1 in the regulation of the apolipoprotein AI (APOAI) gene. Using RNA interference and adenovirus-mediated overexpression, we show that LRH-1 directly regulates APOAI gene transcription. Transient transfection experiments and EMSAs revealed that LRH-1 directly regulates APOAI transcription by binding to an LRH-1 response element located in the proximal APOAI promoter region. Chromatin immunoprecipitation experiments revealed that LRH-1 binds to the human APO AI promoter in vivo. Finally, we show that the transcriptional repressor SHP (small heterodimer partner) suppressed APOAI gene expression by inhibiting LRH-1 transcriptional activity. Taken together, our results demonstrate that LRH-1 is a novel regulator of APOAI transcription and underscore the role of this receptor in cholesterol homeostasis.
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INTRODUCTION
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ELEVATED LEVELS OF circulating cholesterol are a major risk factor for the development of cardiovascular disease, the largest cause of mortality and morbidity in the industrialized world. Cholesterol homeostasis is a complex process that involves the coordinate regulation of its biosynthesis, transport, storage, and catabolism. Most mammalian cells are unable to catabolize this lipid and, thus, it is necessary for peripheral tissues to export their excess cholesterol to the liver where it is converted to bile acids or secreted into the bile as free sterol. This process is known as reverse cholesterol transport and is particularly important in the removal of cholesterol from the vascular intima. Epidemiological, animal, and in vitro studies have demonstrated that high-density lipoprotein (HDL), which is comprised of cholesterol, cholesteryl ester, triglyceride, phospholipid, and apolipoproteins, is a central component of this pathway and levels of plasma HDL are inversely correlated to risk of cardiovascular disease (1). The biogenesis of HDL is initiated with the release of apolipoprotein AI (APOAI) from the liver and small intestine (see Ref. 2 for review). Having entered the circulation, APOAI acts as an acceptor molecule for phospholipid and cholesterol effluxed from peripheral tissues, forming lipid-poor pre-HDL particles. Using APOAI as a cofactor, the enzyme lecithin:cholesterol acyltransferase rapidly esterifies HDL free cholesterol to cholesteryl ester facilitating further cholesterol efflux to APOAI and maturation of the HDL particle before its removal by the liver. HDL cholesterol and its esters are transferred into the hepatocytes by the scavenger receptor class B type I (SR-BI) cell surface receptor. Alternately, cholesteryl ester transfer protein (CETP) can catalyze the transfer of cholesteryl esters from HDL to apolipoprotein B (APOB)-containing lipoproteins, which can then be extracted from the serum by the hepatic low-density lipoprotein receptor. On entry to the liver, the cholesterol can be stored as cholesteryl esters, secreted directly into the bile, or converted into bile acids by a tightly regulated multienzyme process. The first and rate-limiting step in the classic or neutral pathway of bile acid biosynthesis involves hydroxylation of cholesterol at the 7
-position and is catalyzed by CYP7A1. Expression of CYP7A1 is subject to feedback repression by bile acids and a bile acid response element has been identified in the 5'-flanking region of the gene (3). Multiple, redundant signaling cascades converge on this highly conserved element that is a well-documented binding site for members of the nuclear receptor superfamily of ligand activated transcription factors, notably, liver receptor homolog-1 (LRH-1, NR5A2) and hepatocyte nuclear factor-4
(HNF-4
; NR2A1) (3).
LRH-1 is the mammalian homolog of the Drosophila fushi tarazu F1 receptor (FTZ-F1; NR5A3) and, like FTZ-F1, binds its cognate target sequence [5'-(Py)CAAGG(Py)C(Pu)-3'] as a monomer (4). It is highly expressed in ovary, liver, intestine, and pancreas (4, 5, 6). Nitta et al. (5) reported that LRH-1 bound and activated the CYP7A1 promoter through the bile acid response element, suggesting a role in the bile acid-dependent repression of this gene. It is now known that bile acids suppress transcription of the CYP7A1 gene through a cascade of nuclear receptors, which includes the bile acid receptor FXR (farnesoid X receptor; NR1H4), the transcriptional repressor small heterodimer partner (SHP; NR0B2), and LRH-1 (7, 8). Thus, bile acids activate FXR, which binds to a response element in the SHP promoter as a heterodimer with the 9-cis retinoic acid receptor
(RXR
; NR2B1) and induces expression of the gene. SHP, in turn, interacts with LRH-1 and strongly suppresses its transcriptional activity (7, 8). Studies performed in mice harboring a disrupted Shp gene confirm the importance of the FXR-SHP-LRH-1 cascade in suppression of Cyp7a1; however, they also demonstrate the existence of SHP-independent pathways (9, 10). In addition to CYP7A1, LRH-1 is implicated in the regulation of key transcription factors involved in hepatic and pancreatic development, such as the hepatic nuclear factors HNF-3ß, HNF-4
, and HNF-1
(11). Recently, LRH-1 was shown to regulate expression of aromatase (CYP19) in ovarian and adipose tissue (12) and adiponectin in adipocytes (13). Moreover, LRH-1 is reported to regulate expression of CETP (14) and SR-BI (6), thereby implicating this receptor in HDL remodeling and cholesterol transport.
Intriguingly, a number of clinical studies have documented an inverse correlation between circulating levels of APOAI or HDL and bile acids. Thus, patients receiving the enteric bile acid sequestrant cholestyramine had elevated levels of serum APOAI (15). Conversely, patients with progressive familial intrahepatic cholestasis or biliary atresia, conditions that result in systemic and hepatic accumulation of bile acids, exhibit reduced serum APOAI compared with healthy individuals (16). Furthermore, in similarity to CYP7A1, synthetic and naturally occurring FXR ligands suppress expression of APOAI in primary cultures of human hepatocytes and in transgenic mice harboring a complete human APOAI locus (17). Moreover, the bile acid response element characterized by Staels and co-workers (17) is highly homologous to a previously characterized LRH-1 binding motif in the prototypic LRH-1 target gene
-fetoprotein (4). Taken together, these observations suggested that the FXR-SHP-LRH-1 cascade may also play a role in the regulation of the APOAI gene. Therefore, in this study we examined the role of LRH-1 in the regulation of APOAI expression. We establish that APOAI is directly regulated by LRH-1 and demonstrate interplay between multiple nuclear receptors in the regulation of this gene. These results suggest that LRH-1 plays a key role in cholesterol homeostasis.
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RESULTS AND DISCUSSION
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To identify novel LRH-1 target genes, we performed gene-silencing experiments in a liver-derived cell line, HepG2 cells, using RNA interference technology. Transfection of HepG2 cells with increasing concentrations of small interfering RNA (siRNA) targeting LRH-1 expression resulted in a dose-dependent inhibition of LRH-1 mRNA levels (Fig. 1A
). Western immunoblot analysis revealed that this inhibition occurred also at the protein level and that the nonsilencing control siRNA does not affect endogenous LRH-1 protein expression (Fig. 1B
). As a control, ß-actin protein levels were not modified after siRNA transfection (Fig. 1B
). Interestingly, we found that APOAI gene expression was significantly decreased by a siRNA targeting LRH-1 expression (
60% reduction). Furthermore, this inhibition appeared to be dose dependent (Fig. 1C
). This effect appeared to be specific because a second siRNA targeting LRH-1 mRNA induced a similar down-regulation of APOAI gene expression (data not shown). In addition, SR-BI, an established LRH-1 target gene (6), was down-regulated in cells transfected with the siRNA targeting LRH-1 expression, whereas APOB gene expression was not affected demonstrating the specificity of this effect (Fig. 1C
).

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Fig. 1. Inhibition of LRH-1 Expression Results in Down-Regulation of APOAI in HepG2 Cells
A, HepG2 cells were transfected with increasing concentrations of a siRNA targeting LRH-1 or control siRNA (20 nM). Twenty-four hours post transfection, LRH-1 mRNA levels were measured by quantitative RT-QPCR. B, Western blot analysis of LRH-1 expression 24 h after transfecting HepG2 cells with various siRNAs (10 nM). C, HepG2 cells were transfected with increasing concentrations of a siRNA targeting LRH-1. Forty-eight hours post transfection, APOAI mRNA levels were measured by RT-QPCR. APOB and SR-BI gene expression was measured after 48 h transfection with the siRNA targeting LRH-1 (10 nM) or the nonsilencing siRNA control (10 nM). In all the siRNA experiments performed, transfection efficiency was greater than 90%.
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To further investigate a potential role for LRH-1 in APOAI gene regulation, we generated by homologous recombination an adenovirus encoding mouse LRH-1 (Ad-LRH-1). To confirm the adenovirus construct was producing active LRH-1 protein, a kidney derived cell line known to express very low levels of LRH-1 (CV-1) was transfected with an LRH-1-responsive reporter gene construct, namely the human SHP promoter (bases 572 to +10), and infected with increasing amounts [multiplicity of infection (MOI)] of virus. This resulted in a dose-dependent activation of the human SHP promoter (Fig. 2A
). Furthermore, the LRH-1-dependent activation of this promoter was completely inhibited by overexpression of SHP. By contrast, a control virus expressing green fluorescent protein (Ad-GFP) failed to activate this reporter gene construct. This result indicates that the adenovirus delivers a functional LRH-1 protein. Next, the influence of LRH-1 was tested on APOAI transcription in HepG2 cells. Ectopic expression of LRH-1 resulted in a robust (more than 5-fold) induction of APOAI mRNA in comparison to cells infected with the control virus (Fig. 2B
). In parallel, expression of the CYP7AI gene was significantly (20-fold) increased by LRH-1 overexpression. Again, these data suggest that LRH-1 regulates APOAI gene transcription in human liver cells. To determine whether LRH-1 regulates APO AI gene expression in rodents, C57BL6 mice were injected with Ad-mLRH1 or Ad-GFP. Forty-eight hours later, hepatic LRH-1, CYP7A1, and APOAI mRNA levels were quantified by Taqman analysis (Fig. 2C
). As expected, CYP7A1 was significantly induced by LRH-1 overexpression (4-fold). By contrast, APOAI gene expression was not affected by LRH-1, suggesting that LRH-1-mediated APOAI gene regulation occurs in a species-specific manner.

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Fig. 2. Ectopic Expression of LRH-1 Induces Apo AI Gene Expression in HepG2 Cells
A, CV-1 cells were transfected with the human SHP promoter (100 ng) and increasing MOI of Ad-LRH-1 or Ad-GFP for 24 h in the presence or absence of a SHP expression vector (pSG5-SHP). Transfection efficiency was greater than 50% and 80% of the cells were infected as determined by GFP staining. Data are mean ± SD of four individual transfections. B, HepG2 cells were infected with Ad-mLRH-1 or Ad-GFP (MOI = 50). Total RNA was extracted and APOAI, CYP7A1 and mLRH-1 mRNA levels were measured by quantitative RT-QPCR. Data are mean ± SD of three individual experiments. C, C57BL6 mice were infected with Ad-mLRH-1 or Ad-GFP by tail vein injection. 48 h later, mice were killed and total liver RNA was prepared. APOAI, LRH-1 and CYP7A1 mRNA levels were quantified by Taqman analysis.
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To determine the molecular mechanism by which LRH-1 regulates APOAI expression, a 1.4-kb fragment of the APOAI promoter was isolated and inserted upstream of a luciferase reporter gene. Transient transfection experiments performed in HepG2 cells revealed that LRH-1 dose-dependently induced APOAI promoter activity (Fig. 3A
). A highly reproducible maximal induction of 3-fold was observed in this setting. By contrast, LRH-1 cotransfection in CV-1 cells led to a dramatic increase in of APOAI promoter activity (up to 11-fold). The more robust response observed in the CV-1 cells most likely reflects the lack of LRH-1 protein expression and lower basal activity of the APOAI-luciferase reporter observed in these cells (Fig. 3C
). Taken together, these results suggested that LRH-1 controls APOAI expression at the transcriptional level. Interestingly, the murine APOAI promoter was also responsive to LRH-1, albeit, to a much lesser extent than the human (Fig. 3D
). This weaker inducibility of the murine promoter construct could be explained by the relatively high basal activity (30-fold higher) of the mouse compared with the human promoter (data not shown). This is likely to be explained by regulatory elements located in the distal promoter because the proximal region is well conserved between species. Furthermore, those results explain, at least in part, the lack of APOAI induction in mice where LRH-1 has been overexpressed (Fig. 2C
). Interestingly, such species-specific APOAI gene regulation have already been reported for another member of the nuclear receptor superfamily, namely HNF4
, that plays a key role in APOAI gene transcription in human but not in mouse liver cells (22).

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Fig. 3. LRH-1 Regulates APOAI Expression at the Transcriptional Level
HepG2 (A) or CV-1 cells (B) were transfected with increasing amounts of an LRH-1 expression plasmid (0, 25, 50, or 100 ng) and the human APOAI promoter (100 ng). C, Western blot analysis of 25 µg of total extracts derived from HepG2 or CV1 cells, was performed as described in Materials and Methods. D, CV-1 cells were transfected with either mouse or human APOAI promoter (100 ng) and increasing amounts of LRH-1 expression vector (0, 25, 50, or 100 ng).
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Because the response to LRH-1-dependent transactivation of the APOAI promoter was considerably stronger in CV-1 cells compared with HepG2 cells, we decided to perform promoter-mapping experiments in this cell line. Bioinformatic analysis of the human APOAI promoter revealed the presence of several putative LRH-1 binding sites (data not shown). Interestingly, one potential binding site (5'-TGATCCTTGAAC-3') located approximately 130 bp upstream of the transcription initiation site coincided with a previously described element that was reported to mediate the bile acid-dependent suppression of APOAI expression. Given the role of LRH-1 in the suppression of the CYP7A1 and the apical sodium-dependent bile acid transporter (ASBT) genes (7, 18), we investigated whether this site was a functional LRH-1 binding site using site directed mutagenesis. As expected, cotransfection of LRH-1 resulted in a strong induction of the wild type APOAI promoter (Fig. 4
). Mutation of the putative LRH-1 response element almost completely abolished the LRH-1-dependent activation, demonstrating that this site is indeed a functional LRH-1 response element capable of conferring responsiveness on the APOAI promoter (Fig. 4
). Next, EMSAs using in vitro-translated LRH-1 protein were performed to examine whether LRH-1 could directly bind to this response element. When incubated with recombinant LRH-1, a radiolabeled probe corresponding to the 133 site (apoAI-133; Fig. 5A
) produced a shifted protein/DNA complex. This band was efficiently competed by the wild-type but not by the mutant (apoAI-133mut) unlabeled oligonucleotide (Fig. 5B
), indicating that LRH-1 binds to this response element in a specific manner in vitro. To determine whether LRH-1 associates with the human APOAI promoter in vivo, we performed chromatin immunoprecipitation (ChIP) assay in HepG2 cells (Fig. 5C
). LRH-1 binding was observed in the proximal APOAI promoter that contains the LRH-1 response element, but not, in the more distal region as determined by PCR amplification (Fig. 5C
). This result indicates that LRH-1 binds to the APOAI promoter in vivo. Taken together, these results indicate that LRH-1 regulates APOAI gene transcription via a response element located in the vicinity of the B site as originally defined by Papazafiri et al. (19) and subsequently characterized as a negative bile acid response element by Claudel et al. (17).

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Fig. 4. Identification of a Functional LRH-1 Response Element within APOAI Promoter
CV-1 cells were transfected with the human wild-type or LRH-RE mutated promoter construct (100ng) and LRH-1 (50 ng) or empty vector (pSG5). Data are mean ± SD of four individual transfections.
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Fig. 5. LRH-1 Binds to the APOAI Promoter in Vitro and in Vivo
The ability of LRH-1 to bind the putative response element in the APOAI gene was examined by EMSA as outlined in Materials and Methods. A, Sequence of the oligonucleotide probes (sense strand only) corresponding to the putative LRH-1 response element from the APOAI gene (apoAI-133) and a mutated derivative of this site (apoAI-133mut, mutated bases are shown in lowercase). The sequence of the APOAI site is aligned with a previously characterized LRH-1 binding site in the rat Cyp7a1 promoter (Cyp7a1 LRH-1) and a a consensus LRH-1 RE for comparison. B, EMSA was performed with recombinant human LRH-1 as indicated and radiolabeled apoAI-133. Competition EMSA was performed using in vitro synthesized LRH-1 and increasing concentrations (5x, 25x, and 100x) of unlabeled apoAI-133 or apoAI-133mut oligonucleotides. The position of the shifted LRH-1 complex and free probes are indicated. C, HepG2 cells were subjected to ChIP assay using an LRH-1 antibody or control IgGs as described in Materials and Methods. In vivo APOAI promoter occupancy was assessed by amplifying by PCR the proximal and distal APOAI promoter regions.
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Using site-directed mutagenesis experiments, Claudel et al. (17) showed that this site is involved in FXR-mediated bile acid-dependent inhibition of APOAI expression. Because FXR has been shown to negatively regulate CYP7A1 and the ASBT genes via a SHP-dependent repression of LRH-1 transcriptional activity (7, 8, 18), we examined the role of SHP in APOAI gene regulation. Treatment of human primary hepatocytes with a nonsteroidal FXR agonist (GW4064) reduced APOAI and increased SHP gene expression in a dose-dependent manner (Fig. 6A
). The inverse correlation between APOAI and SHP expression in response to FXR agonists indirectly supports the existence of a SHP-dependent mechanism of APOAI repression. Transient transfection of increasing amounts of SHP led to a dose-dependent inhibition of the human APOA1 promoter activity in HepG2 cells (Fig. 6B
). By contrast, the mutated construct, where the LRH-1 binding site has been disrupted, was not affected by SHP overexpression, suggesting that SHP-mediated APOAI promoter occurs in an LRH-1-dependent manner (Fig. 6B
). Importantly, this construct has a significantly lower basal promoter activity, which is consistent with the role of LRH-1 in contributing to APOAI gene regulation. Taken together, these findings suggest that the suppression of APOAI by FXR activators is most likely mediated by an FXR-SHP-LRH-1 cascade as described for other bile acid-responsive genes.

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Fig. 6. Suppression of APOAI Promoter Activity by SHP
A, Primary human hepatocytes were maintained as described in Materials and Methods and treated with the indicated concentrations of GW4064 for 48 h before harvest and determination of APOAI and SHP mRNA levels by RT-QPCR. B, HepG2 cells were transfected with the wild type or the LRH-1 response element-mutated APO AI promoter (100 ng) and increasing amounts of SHP (50, 100, and 200 ng) or empty vector (pSG5). Data are mean ± SD of four individual transfections. WT, Wild-type.
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In this study, we report that APOAI is a novel target gene for the orphan nuclear receptor LRH-1. APOAI is the major protein component of HDL, which is an inversely correlated risk factor for coronary artery disease (1). APOAI plays a crucial role in reverse cholesterol transport and, therefore, constitutes a potentially important pharmacological target for the treatment of dyslipidemia and atherosclerosis. Recently, Schoonjans et al. (6) reported the regulation of the SR-BI gene by LRH-1 in the liver and in ovary, two major sites of LRH-1 expression. SR-BI mediates the selective uptake of HDL and plays a key role in the reverse cholesterol transport. Moreover, LRH-1 has been shown to regulate CETP gene expression, a key protein involved in HDL remodeling (14). Finally, LRH-1 plays a central role in bile acid synthesis by controlling the genes encoding CYP7A1 and also CYP8B1, the oxysterol 12
-hydroxylase required for cholic acid production (5, 7, 8). By regulating the expression of this cohort of genes LRH-1 appears to play a central role in the elimination of cholesterol from the body.
The molecular mechanisms underlying expression of the APOAI gene have received considerable attention (see Ref. 20 for review). APOAI transcription has been show to be modulated by various nuclear receptors, such as apolipoprotein regulatory protein-1 (ARP-1; NR2F2) (21), HNF-4
(22), and peroxisome proliferator-activated receptor
(PPAR
, NR1C1) (23). More recently, bile acids, which are naturally occurring ligands for the nuclear receptor FXR (24, 25), have been shown to inhibit APOAI gene expression in vitro and in vivo (17, 26). Srivastava and co-workers (26) showed that cholic acid regulates APOAI at the level of transcription and suggested that the bile acid-dependent induction of ARP-1, a negative regulator of APOAI expression, was responsible for this suppression. Subsequently, Claudel and co-workers (17) identified a novel bile acid response element in the vicinity of the B site described by Papazafiri et al. (19) and suggested that ligand-activated FXR binds to this site as a monomer and suppresses APOAI expression. Here, we mapped this B site as a functional LRH-1 response element using promoter analysis and EMSA (Figs. 4
and 5
). Moreover, we showed using ChIP assays that LRH-1 binds to the human APO AI promoter in vivo (Fig. 5C
). Because FXR has been shown to inhibit APOAI promoter activity through this site, we propose that FXR negatively regulates APOAI transcription by inducing SHP which, in turn, trans-represses LRH-1 activity. A similar mechanism has been proposed for the bile acid-dependent suppression of the CYP7A1, CYP8B1, and ASBT genes. In line with this hypothesis, we also showed that SHP represses APOAI promoter activity in a LRH-1-dependent manner (Fig. 6B
). Although these studies strongly suggest that SHP is key regulator of APOAI, we cannot rule out the involvement of SHP-independent mechanisms in APOAI gene regulation, as suggested for CYP7A1. Further studies will be necessary to determine which mechanism(s) are biologically relevant in vivo.
In conclusion, this study led to the identification of LRH-1 as a novel modulator of APOAI gene and reinforces the concept that LRH-1 plays a crucial role in bile acid biosynthesis but also in reverse cholesterol transport.
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MATERIALS AND METHODS
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Cell Culture
HepG2 and CV1 cells (ATCC, Manassas, VA) were maintained in basic Eagles medium supplemented with 2 mM glutamine, 1% nonessential amino acids and 10% (vol/vol) fetal calf serum (FCS) in an atmosphere of 5% CO2 at 37 C. Human primary hepatocytes were provided by Biopredic (Rennes, France) and cultured in Williams E medium supplemented with 1% FCS, 100 nM dexamethasone, 100 U/ml penicillin, 100 µg/ml streptomycin, and insulin transferrin glutamine streptomycin.
Plasmids
The plasmids, pSG5-LRH-1, pSG5-SHP, and pSG5-HNF4
have been previously described (7). The pSG5 plasmid, was purchased from Stratagene (La Jolla, CA). The human and mouse APOAI promoter constructs (1162+234) were obtained by PCR amplification using human and mouse genomic DNA (CLONTECH, Palo Alto, CA) as template. The resulting PCR products were inserted as a BglII/HindIII fragment into pGL3 basic vector (Promega, Madison, WI) yielding human Apo AI-Luc and mouse Apo AI-Luc, respectively. The mutation of the LRH-1 binding site within human Apo AI promoter was obtained by site-directed mutagenesis (Stratagene) using the following oligonucleotides: 5'-CAGAGCTGATCCTTTAACTCTTAAG-3' and 5'-CTTAAGAGTTAAAGGATCAGCTCTG-3'. All constructs were verified by DNA sequence analysis.
Transient Transfection Assays
HepG2 and CV1 cells, plated in 24-well plates at 5060% confluence in basic Eagles medium supplemented with 10% FCS, were transiently transfected with reporter and receptor expression plasmids using Fugene 6 reagent (Roche Molecular Biochemicals, Indianapolis, IN) as indicated in the figure legends. The pSEAP2 expression plasmid (CLONTECH) was cotransfected to assess transfection efficiency. Forty-eight hours post transfection, cells were collected and assayed for luciferase and alkaline phosphatase activities. All experiments were repeated at least three times. Results are expressed as mean ± SD.
RNA Interference
Twenty-one-nucleotide RNA oligonucleotides directed against human LRH-1 were obtained from Dharmacon (Lafayette, CO). QIAGEN (Valencia, CA) provided the nonsilencing control siRNA. The siRNA sequence targeting LRH-1 (GenBank accession no. AB019246) corresponds to the coding region (nucleotides 11991219) relative to the first nucleotide of the start codon. HepG2 cells (40% confluence) were transfected with siRNAs by using TransIt-TKO reagent (Mirus, Madison, WI) following the manufacturers instructions. Twenty-four hours post transfection, cells were refed with fresh medium for additional 24 h.
RNA Analysis
Total cellular RNA was extracted using TRIZOL (Invitrogen Life Technologies, Carlsbad, CA). Real-time quantitative PCR (RT-QPCR) assays were performed using an Applied Biosystems (Foster City, CA) 7900 sequence detector. Total RNA (1 µg) was reverse transcribed with random hexamers using Taqman reverse-transcription reagents kit (Applied Biosystems) following the manufacturers protocol. RNA expression levels were determined by Sybr green assays as described. 18SrRNA transcript was used as an internal control to normalize the variations for RNA amounts. Gene expression levels are expressed relative to 18S rRNA. Apo AI, Apo B, SR-BI, SHP, LRH-1 and CYP7A1 mRNA levels were measured using the following oligonucleotides: For 18S: 5'-GGGAGCCTGAGAAACGGC-3' and 5'-GGGTCGGGAGTGGGTAATTT-3'; for APOAI: 5'-CTCGGCATTTCTGGCAGCAA-3' and 5'-ACGTACACAGTGGCCAGGTCCTT-3'; for Apo B: 5'-TTCTGCCACATGCTTCCTCTT-3' and 5'-GACCCGCCCCTTGTCAA-3'; for SR-BI: 5'-TCCTCCGGGTCTTAAAGGTGAT-3' and 5'-GGCCTTTTGGTCCAGAATTTC-3'; for SHP: 5'-CGCCCTATCATTGGAGATGT-3' and 5'-AGGAGCATTGG GTCACCTC-3'; for LRH-1: 5'-TGCAGGCTGAAGAATACCTCT-3' and 5'-GCATGCAACATTTCAATGAG-3'; for CYP7A1: 5'-CCCTTTGGATCGGGAGCTA-3' and 5'-AGCTCCAATTC AAAATAAGAAAGCAT-3'.
Adenovirus Generation
The recombinant adenovirus (Ad-GFP and LRH-1) was obtained by homologous recombination in Escherichia coli (27) after insertion of the cDNAs into pAdCMV2. Viral stocks were created as previously described (28). Viral titers were determined by a plaque assay on 293 cells and expressed as plaque-forming units per milliliter. Cells were infected, in most of the experiments, at a MOI of 50 viral particles per cell, by adding virus stocks directly to the HepG2 culture medium.
Western Blot Analysis
Protein extracts were fractionated on 10% polyacrylamide gel under reducing conditions (sample buffer containing 10 mM dithiothreitol, and transferred onto nitrocellulose membranes). LRH-1 protein was visualized by probing the membrane with a goat polyclonal LRH-1 antibody (Santa Cruz Biotechnology, Inc., Santa Cruz, CA; sc-6062). After incubation with a secondary peroxidase-conjugated antibody, signals were detected by chemiluminescence (Amersham Biosciences, Buckinghamshire, UK).
EMSA
Double-stranded oligonucleotides were end-labeled with
32P-ATP using T4 polynucleotide kinase according to standard procedures. In vitro-translated proteins (2 µl) were incubated with 100,000 cpm of labeled probe for 20 min at room temperature in 20 µl of buffer containing 10 mM Tris (pH 7.5), 50 mM NaCl, 1 mM dithiothreitol, 1 mM EDTA, 5% glycerol, 0.3 µg BSA and 2 µg of poly (deoxyinosine-deoxycytosine). DNA/protein complexes were analyzed by electrophoresis in a 5% nondenaturing polyacrylamide gel with 0.5x Tris-borate-EDTA buffer. The gel was then dried and exposed at 80 C for autoradiography.
ChIP
ChIP assays were performed essentially as previously described (29). Briefly, 50 x 106 of HepG2 cells were cross-linked for 30 min at 4 C by adding a 11% formaldehyde-containing solution. Cross-linking was stopped by adding glycine to a final concentration of 125 mM for 5 min. Then, cells were rinsed with PBS, harvested and centrifuged at 600 x g for 5 min at 4 C. Pellets were resuspended in lysis buffer [50 mM HEPES-KOH (pH 8.0), 1 mM EDTA, 0.5 mM EGTA, 140 mM NaCl, 10% glycerol, 0.5% Nonidet P-40, 0.25% Triton X-100, 1 mM phenylmethylsulfonyl fluoride (PMSF), and leupeptin/pepstatin A/aprotinin 5 µg/ml each] and rotated for 10 min at 4 C. The nuclei were collected by centrifugation and resuspended in 10 ml wash buffer [10 mM Tris-HCl (pH 8), 1 mM EDTA, 0.5 mM EGTA, 200 mM NaCl, 1 mM PMSF, and leupeptin/pepstatin A/aprotinin 5 µg/ml each] and rotated again. Washed nuclei were centrifuged and resuspended in 1x RIPA buffer [10 mM Tris-HCl (pH 8), 1 mM EDTA, 0.5 mM EGTA, 140 mM NaCl, 1% Triton X-100, 0.1% sodium dodecyl sulfate, 0.1% Na-deoxycholate, 1 mM PMSF, and leupeptin/pepstatin A/aprotinin 5 µg/ml each] and subsequently sonicated leading to the generation of DNA fragment sizes of 0.31.5 kb. Samples were cleared by centrifugation at 16,000 x g for 10 min at 4 C. Ten percent of the cleared supernatant was used as input and the remaining volume was immunoprecipitated using a goat LRH-1 polyclonal antibody (8 µg/ml; Santa Cruz Biotechnology, Inc.; sc-6062). After extensive washings, proteins were digested by adding proteinase K (100 µg/ml) and placed at 55 C for 3 h followed by 6 h at 65 C to reverse cross-links. DNA was extracted by standard procedure and pellets were resuspended in Tris-EDTA buffer. The human proximal and distal APOAI promoter regions were PCR-amplified using the following oligonucleotides: APOAI_DF 5'-TAACTTGCCCACGATCTTCC-3' and APOAI DR 5'-CTTAGATTGAAGACGTCTCCC-3', APOAI_PF 5'-TGCAAGCCTGCAGACACT-3' and APOAI_PR 5'-CTAAGCAGCCAGCTCTTGC-3'. PCRs were analyzed by electrophoresis on a 1% agarose gel.
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ACKNOWLEDGMENTS
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The authors would like to thank Hervé Coste, Jean-Marie Brusq, and Valerie Paillard (GlaxoSmithKline, Cardiovascular and Urogenital Diseases Center of Excellence for Drug Discovery) for providing valuable reagents; and Paul Wilson (GlaxoSmithKline, Genomic Research) for bioinformatic support.
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FOOTNOTES
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Abbreviations: Ad-GFP, Control virus expressing green fluorescent protein; APOAI, apolipoprotein AI; APOB, apolipoprotein B; ASBT, apical sodium-dependent bile acid transporter; CETP, cholesteryl ester transfer protein; ChIP, chromatin immunoprecipitation assay; FCS, fetal calf serum; FXR, farnesoid X receptor; HDL, high-density lipoprotein; HNF-4
, hepatocyte nuclear factor-4
; LRH-1, liver receptor homolog-1; MOI, multiplicity of infection; PMSF, phenylmethylsulfonyl fluoride; RT-QPCR, real-time quantitative PCR;
SHP, SHP small heterodimer partner; SR-BI, scavenger receptor class B type I.
Received for publication March 31, 2004.
Accepted for publication June 11, 2004.
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NURSA Molecule Pages Link:
- Nuclear Receptors:
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