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Departments of Medicine (K.-Y.K., K.-H.J., E.M.J., U.B.K.) and Obstetrics, Gynecology and Reproductive Biology (E.R.N.), Brigham and Womens Hospital and Harvard Medical School, Boston, Massachusetts 02115
Address all correspondence and requests for reprints to: Ursula B. Kaiser, M.D., Department of Medicine, Brigham and Womens Hospital and Harvard Medical School, 221 Longwood Avenue, Boston, Massachusetts 02115. E-mail: UKaiser{at}partners.org.
| ABSTRACT |
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T31 and LßT2 cell lines. Serial mutagenesis and supershift assays identified nuclear factor Y (NF-Y) binding to 288/284 and Oct-1 binding to a TAAT sequence at 290/287. Binding of these two transcription factors was confirmed in vivo by chromatin immunoprecipitation assay and increased in response to GnRH stimulation. To define the functional significance of these sequences in the regulation of mGnRHR gene transcription, transient transfection assays were performed in
T31 cells using a 1.2-kb mGnRHR (1164/+62) gene promoter-luciferase reporter construct with selective mutations of the Oct-1, NF-Y, and/or the previously characterized activating protein 1 (AP-1) binding site (274/268). Individual mutations in the Oct-1, NF-Y, and AP-1 sites decreased both basal expression and stimulation by GnRH agonist, and the combined mutation of the Oct-1 and AP-1 binding sites further reduced basal transcriptional activity and abolished GnRH stimulation. Overexpression of NF-YA increased GnRHR promoter activity, whereas expression of a dominant negative NF-YA mutant decreased activity, further supporting a role of NF-Y in regulation of mGnRHR gene transcription. In addition, knockdown of Oct-1 by small interfering RNA confirmed that Oct-1 is important for mGnRHR gene expression. In conclusion, NF-Y and Oct-1 bind to the SURG-1 element to direct basal and GnRH-stimulated expression of the mGnRHR gene. | INTRODUCTION |
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A 1.2-kb 5'-flanking region of the mouse GnRHR (mGnRHR) gene promoter has been cloned and characterized (7, 15). Although we have relatively little knowledge about the transcriptional mechanisms controlling the GnRHR gene, several cis-elements have been identified to be involved in mGnRHR gene expression. These include a steroidogenic factor 1 (SF-1) site at position 181/173 relative to the major transcriptional start site (16), and a GnRHR-activating sequence at 329/318 that binds activating protein 1 (AP-1), Smad proteins, and FoxL2 and mediates both activin and GnRH responsiveness (17, 18, 19). Previous studies by our group and others have identified two cis-elements, designated as SURG (Sequence Underlying Responsiveness to GnRH)-1 (at position 292/285) and -2 (at position 276/269), that are important for GnRH-stimulated transcription of the mGnRHR. SURG-2 overlaps with a conserved AP-1 consensus binding site, and mutation of SURG-2 results in markedly reduced transcription in GnRH-stimulated cells (7, 13). Mutation of SURG-1 also significantly diminished, but did not fully abolish, GnRH stimulation (7). Although it is established that SURG-2 is an AP-1-binding site, it is not known which protein(s) binds to SURG-1 and how it mediates the response to GnRH. The identification of the trans-acting factor(s) binding to the SURG-1 element, its role in regulation of transcription, and possible interaction with other transcription factors are essential for a better understanding of the control of GnRH-stimulated GnRHR gene expression.
Considering the dynamic regulation of gonadotropin secretion, we can expect that regulation of GnRHR gene expression might be complex. In spite of its significance, however, the molecular mechanisms by which GnRHR gene transcription is regulated have not been intensively investigated. In the present study, we have identified and characterized two overlapping cis-acting motifs within the SURG-1 element that bind to nuclear proteins and are involved in regulation of basal and GnRH-stimulated mGnRHR gene expression.
| RESULTS |
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T31, LßT2, and CV-1 cells, and a 32P-end-labeled oligonucleotide corresponding to 300/277 of the mGnRHR gene promoter (S1) as probe (Fig. 1
T31 and LßT2, as well as in the nongonadotropic CV-1 cell line, derived from monkey kidney fibroblast cells. Complex C was less intense than complexes A and B, was variable in its presence, and was less easily detected in LßT2 cells than in
T31 cells. Nuclear extracts from CV-1 cells had a distinct third complex with slower mobility than the complex C of
T31 and LßT2 cells, suggesting the formation of a different protein-DNA complex.
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T31, LßT2, and CV-1 cells treated with 100 nM GnRH agonist for 1 or 4 h and used in EMSA. The intensity of complexes A, B, and C was not affected by GnRH treatment, and no new complexes were formed (Fig. 1A
To confirm the specificity of protein-DNA binding in these complexes, cold competition studies were performed with either
T31 or LßT2 nuclear extracts. A 500-fold excess of unlabeled (cold) competitor oligonucleotides was added to the EMSA reaction mixtures. S1 and an oligonucleotide corresponding to the SF-1-binding site in the rat LHß gene promoter (SF-1) (20) were used as homologous and heterologous competitors, respectively. Complexes A, B, and C were all effectively competed by S1 but not by SF-1, confirming the specificity of protein-DNA binding to the SURG-1 element (Fig. 1B
). In summary, the results of these EMSA studies indicate that nuclear proteins bind specifically to 300/277 of the mGnRHR gene promoter.
Complex B Binds to an Inverse CCAAT Sequence in the SURG-1 Element of the mGnRHR Gene Promoter and Includes Nuclear Factor Y (NF-Y)
To further characterize and localize the binding sites for the complexes, additional EMSA experiments were performed using the S1 oligonucleotide as probe and
T31 nuclear extracts. Oligonucleotides with serial 2-bp mutations between 294/279 (designated M1M8, Fig. 2A
) were used as competitors. Oligonucleotides M3M7 failed to effectively compete for complex B, with the greatest effect by mutations in oligonucleotides M4, M5, and M6 (Fig. 2B
). The sequence defined by these mutations is ATTGGA, which contains the sequence CCAAT on the antisense strand. Although many DNA-binding proteinsin whose acronym the word CCAAT is present [e.g. CCAAT transcription factor/nuclear factor 1; C/EBP (CCAAT/enhancer binding protein); and CDP (CCAAT displacement protein)]have been isolated and characterized based on their ability to bind to this consensus sequence, NF-Y is known to be a major protein recognizing the CCAAT box (21). To determine whether NF-Y binds to this element in
T31 cells, supershift EMSA was performed, using antibodies to the three subunits of NF-Y (A, B, and C). All three antibodies led to the formation of supershifted complexes, confirming the presence of NF-Y in complex B (Fig. 2C
). In contrast, antibodies for C/EBPß and CDP had no effect. Taken together, these results indicate that complex B binds to 288/284 in the SURG-1 element of the mGnRHR gene promoter and contains NF-Y.
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T31 nuclear extracts in the presence of anti-NF-YA antibody, using the S1 oligonucleotide as probe and the serial 2-bp mutant oligonucleotides of the region 294/279 as competitors. Complex B was supershifted by the anti-NF-YA antibody, allowing complex A to be seen more clearly (Fig. 3A
-subunit gene in gonadotropes (Lhx2 and 3) and thyrotropes (Msx-1). Supershift EMSA using antibodies to these homeodomain proteins also failed to supershift complexes A and C (Fig. 3B
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T31 cell line as well as in ovarian and placental cell lines (26). Oct-1 is known to show affinity toward TAAT core sites (27), although its canonical binding site is ATGCAAAT. Therefore, competition EMSA with a 200- or 1000-fold excess of an oligonucleotide containing the Oct-1 consensus binding sequence (5'-TGTCGAATGCAAATCACTAGAA-3') as cold competitor was performed (Fig. 4A
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Closer examination of the sequences flanking the TAAT core sequence in the SURG-1 element reveals a sequence (5'-AGGCTAAT-3') with homology to the Oct-1 consensus octamer sequence (5'-ATGCAAAT-3'), differing by two of eight nucleotides. To further characterize the sequence requirements for Oct-1 and NF-Y binding to overlapping sequences within the SURG-1 element, the nucleotides of the Oct-1 consensus sequence were substituted for the two differing nucleotides in S1 as well as in the M6 mutant oligonucleotide. These oligonucleotides were designated S1-Oct-1 and M6-Oct-1, respectively. The oligonucleotide sequences used are summarized in Fig. 4C
. When these mutant oligonucleotides were used as probes in EMSA with
T31 nuclear extracts, Oct-1 binding was increased (Fig. 4D
). Interestingly, this was associated with elimination of NF-Y binding. In several gene promoters, it has been reported that the nucleotide sequence 3' to the TAAT sequence is also important for Oct-1 binding (27, 28). Therefore, it is worth determining the significance of sequences distal and proximal to TAAT in Oct-1 binding to the SURG-1 element. For this purpose, two additional mutants were prepared (S1-distal mut and S1-proximal mut, see Fig. 4C
). The mutations both distal and proximal to TAAT also markedly diminished Oct-1 binding to SURG-1 (Fig. 4D
). Taken together, these results illustrate the importance of the SURG-1 sequence in maintaining and integrating Oct-1 and NF-Y binding. Mutations in the TAAT sequence as well as in both distal and proximal flanking sequences eliminate Oct-1 binding, whereas nucleotide changes that increase Oct-1 binding lead to loss of NF-Y binding.
Oct-1 and NF-Y Bind to the SURG-1 Element in Vivo
The EMSA studies indicated that NF-Y and Oct-1 present in
T31 and LßT2 cells were able to bind to the SURG-1 element in the mGnRHR gene promoter in vitro. To confirm the interaction of NF-Y and Oct-1 with the mGnRHR gene promoter in vivo in the context of the chromatin structure of the endogenous gene, ChIP assays were performed, using
T31 cells and anti-Oct-1 and anti-NF-YA antibodies (Fig. 5
). Anti-c-Jun antibody was used as a positive control [to identify AP-1 binding to the previously characterized AP-1 binding site in the mGnRHR (7, 13, 29)], and preimmune rabbit IgG was used for a negative control. PCR amplification with a primer pair which amplified the region 337/170, encompassing the GnRHR-activating sequence, SURG-1 and AP-1/SURG-2 elements, was used to detect protein-DNA binding. A PCR product was detected with the anti-c-Jun antibody and was increased by 1 and 4 h of GnRH treatment, suggesting a GnRH-stimulated increase in AP-1 binding, in agreement with previous reports that AP-1 binding to 327/322 and to 274/268 is important for GnRH regulation of GnRHR gene transcription (7, 13, 18). Weak bands for Oct-1 also appeared after 1 and 4 h of GnRH treatment. The weak signal obtained for Oct-1 may be due to reduced interaction of the antibody, raised against an epitope in human Oct-1, for mouse Oct-1. Western blot analysis supported this reduced cross-species affinity (data not shown). Interestingly, NF-Y binding also appeared to be increased by GnRH treatment, with a clear band for NF-Y binding seen after 4 h of GnRH treatment. These results indicate that Oct-1 and NF-Y bind to the SURG-1 element in vivo and suggest that binding in vivo is regulated by GnRH.
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T31 cell line. The AP-1 binding site at position 274/268 was previously identified as necessary for GnRH stimulation of mGnRHR gene expression (7, 13). In addition, sequences between 292/285, referred to as SURG-1, were also shown to be necessary for full GnRH responsiveness (7). We have now identified two cis-elements, one for Oct-1 and the other for NF-Y, within this SURG-1 element. This localization suggests that either or both of these cis-elements may contribute to GnRH responsiveness, either alone or in combination with the AP-1-binding site.
To test the functional importance of these newly defined cis-elements in mediating GnRH stimulation of mGnRHR gene transcription, we introduced mutations in the Oct-1, NF-Y, and AP-1 binding sites, individually and in combination, into 1164/+62 mGnRHR-Luc (Fig. 6A
). To determine the effects of these mutations on GnRH responsiveness, these constructs were transfected into
T31 cells by calcium phosphate coprecipitation for 4 h, followed by treatment with 100 nM GnRH agonist for 4 h. This experimental paradigm was selected to optimize the GnRH response. Using this transfection paradigm, luciferase activity was low in the absence of GnRH. Wild-type 1164/+62 mGnRHR-Luc activity increased by 7.4 ± 0.6-fold in response to 100 nM GnRH agonist (Fig. 6B
). Point mutation of the Oct-1, NF-Y, or AP-1 binding site resulted in a significant reduction in GnRH stimulation compared with wild type, to 3.1 ± 0.6, 4.6 ± 0.6, or 3.6 ± 0.6-fold, respectively. The combined mutation of the Oct-1 and NF-Y binding sites did not lead to any further reduction in GnRH stimulation, compared with mutation of the Oct-1 or NF-Y binding site alone. Interestingly, the combined mutation of the Oct-1 and AP-1 elements, or of all three elements, was sufficient to completely abolish GnRH responsiveness of the mGnRHR gene promoter (Fig. 6B
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T31 cells by calcium phosphate coprecipitation, this time for 20 h to measure effects on basal activity of the mGnRHR gene promoter (Fig. 6C
NF-YA Increases Mouse GnRHR Gene Transcription through the SURG-1 Element
Our results have demonstrated that NF-Y and Oct-1 bind to cis-elements within SURG-1 in the mGnRHR gene promoter, and that these cis-elements are involved in regulation of basal and GnRH-stimulated mGnRHR gene transcription. However, these results do not directly demonstrate a role of NF-Y and Oct-1 in regulation of mGnRHR gene transcription. To confirm this role for NF-Y, the effects of overexpression of NF-YA, and of interfering with the function of endogenous NF-Y by expressing a dominant negative (DN) mutant NF-YA, were determined (Fig. 7
). Wild-type 1164/+62 mGnRHR-Luc was cotransfected into
T31 cells together with an expression vector encoding wild-type NF-YA. After 24 h, cells were harvested and luciferase activity was measured and normalized to ß-galactosidase activity. NF-YA overexpression increased GnRHR gene transcription by 1.7 ± 0.7-fold. Western blot analysis confirmed increased NF-YA expression in transfected cells (data not shown). Similar transfections were performed using an expression vector encoding a DN NF-YA mutant, which can bind to NF-Y subunits B and C to form a trimer but lacks DNA binding activity (30). Unlike the wild-type NF-YA, the DN NF-YA did not increase mGnRHR gene transcription, but rather reduced transcriptional activity. Parallel transfections were performed using 1164/+62 GnRHR-Luc containing a mutation in the NF-Y-binding site (µNF-Y), in which overexpression of either wild-type or DN NF-YA had no effect on luciferase activity. These results demonstrate directly a role for NF-Y in the regulation of mGnRHR gene transcription via the SURG-1 element.
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T31 cells, and after 24 h cells were harvested and total RNA was extracted. RNA was reverse transcribed and used as template for real-time quantitative PCR, with normalization to glyceraldehyde-3-phosphate dehydrogenase (GAPDH). Cells transfected with Oct-1 siRNA had a 53% decrease in Oct-1 mRNA levels compared with untransfected controls (Fig. 8A
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| DISCUSSION |
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A CCAAT box, which binds NF-Y, was identified at position 288/284 within the SURG-1 element of the mGnRHR gene promoter in the reverse orientation. NF-Y is a ubiquitous transcription factor and is known to be involved in basal or induced expression of various genes (32). It consists of three subunits (A, B, and C) that form a heterotrimer for binding to its target DNA element (33). Recently, it has been reported that NF-Y contributes to cell-specific expression of the mouse FSHß gene by physically and functionally interacting with SF-1 in the LßT2 cell line (34). Furthermore, an interaction between NF-Y and AP-1 at overlapping binding sites was suggested to be important for maximal induction of the FSHß gene by GnRH (35). In addition, an NF-Y binding site has been shown to be important for basal, but not GnRH-stimulated, expression of the bovine LHß subunit gene in gonadotropes in vivo and in vitro (36). In the case of the GnRHR gene, the NF-Y-binding site in SURG-1 mediates both basal expression and responsiveness to GnRH (Fig. 6
, B and C). There is mounting evidence that NF-YA is a regulatory subunit of the trimeric complex (37, 38) and that regulation is achieved at a posttranscriptional level (39). Overexpression of NF-YA and interference with NF-Y function using a DN NF-YA mutant confirmed the role of NF-Y in GnRHR gene transcription. These effects were prevented by mutation of the NF-Y-binding site, further confirming that NF-Y binding to the SURG-1 element is critical for GnRHR gene expression (Fig. 7
). Whereas GnRH had no effect on NF-Y binding to the mGnRHR gene promoter in vitro in EMSA studies (Fig. 1A
), ChIP assay demonstrated an increase in NF-Y binding after GnRH agonist stimulation. This discrepancy suggests that in vivo binding is more finely regulated, possibly by other factors in a physiological context. Indeed, NF-Y is known to interact with components of the basal transcriptional machinery as well as with coactivators (21); such interactions may be regulated by GnRH.
Oct-1, a POU domain transcription factor, has been shown to play a role in the regulation of both GnRH and GnRHR gene expression. There has been increasing evidence for a dual role of Oct-1 in the regulation of the GnRH gene. Oct-1 is essential for activity of the proximal conserved region and distal neuron-specific enhancer of the GnRH gene promoter (40, 41). In addition, immunoneutralization of Oct-1 as well as mutation of an octamer-binding site in the rat GnRH promoter blocked the pulsatile nature of GnRH promoter activity in GT17 neuronal cells (42). On the other hand, Oct-1 is involved in tethering of the glucocorticoid receptor to a negative glucocorticoid response element, playing a role in glucocorticoid repression of the mouse GnRH gene. Moreover, Oct-1, together with C/EBPß, is a downstream transcriptional regulator involved in the repression of human GnRH gene expression by the glutamate/NO/cGMP signal transduction pathway (43). Interestingly, Oct-1 also appears to play opposing roles in the regulation of the GnRHR gene. Whereas Oct-1 has a role in the activity of a placenta-specific upstream promoter in the human GnRHR gene (44), the same factor has been reported to be involved in the transcriptional repression of the GnRHR gene through an element at 1017/1009 (relative to the translational start site) in ovarian granulosa-luteal cells. The present study defines additional roles for Oct-1 in the regulation of the GnRHR gene. Oct-1 binds to the SURG-1 element in the mGnRHR gene promoter, and mutation of this Oct-1-binding site interfered with basal and GnRH-stimulated mGnRHR gene transcription. ChIP assay confirmed Oct-1 binding in vivo, and RNA interference studies further confirmed the role of Oct-1 in GnRHR gene expression. These results suggest that the role of Oct-1 in GnRHR gene regulation can vary in a tissue-specific fashion or according to the physiological context.
The octamer sequence ATGCAAAT is a classical Oct-1 and Oct-2 binding site. Some regulatory elements recognized by Oct-1 have a modified octamer sequence such as ATGATAATGAG and TAATGA(A/G)AT (45, 46). In vitro experiments have shown that Oct-1 and Oct-2 proteins can bind to TAAT-core- containing homeodomain binding sequences (27). The present study demonstrated that Oct-1 binds to the SURG-1 element. Binding of Oct-1 to the SURG-1 element requires the octamer sequence at 294/287. When the four bases 5' to TAAT are mutated, Oct-1 binding is eliminated. Oct-1 has two POU domains. The N-terminal POUS domain makes its primary contacts with the 5'-half of the octamer site (ATGC), whereas the C-terminal POUH domain makes its primary contacts with the 3'-part of the octamer site (AAAT) on the opposite side of the double helix (47). The requirement of the full octamer sequence suggests that both POUS and POUH are involved in Oct-1 binding to SURG-1 in the mGnRHR gene promoter. In Fig. 3
, each of the 2-bp mutations of the four bases 5' to TAAT was not sufficient to reduce Oct-1 binding, likely due to the less stringent sequence specificity for POUS. The region 3' to TAAT also has some effect on Oct-1 binding (Fig. 4C
). Because, in addition to the core octamer sequence, the flanking bases make a significant contribution to the binding affinity of the POU domain (48), this region appears to play a supporting role for the binding affinity of Oct-1 to SURG-1.
The overlap of the binding sites for NF-Y and Oct-1 in the SURG-1 element may be related to interaction between the two factors, such as agonism or antagonism in their function. DNA binding by NF-Y and Oct-1 appear to be independent, because mutation of the NF-Y binding site (M6) retains intact binding of Oct-1, and, similarly, mutation in the Oct-1 binding site (M3) does not affect NF-Y binding (Figs. 3
and 4B
). However, the introduction of sequence modification that increased Oct-1 binding resulted in a decrease in NF-Y binding (Fig. 4D
), suggesting the possibility of competition between these two transcription factors. The balance between the binding of these two factors in vivo may be dependent on the integrated effects of other factors, which can modify the abundance or binding affinity of each transcription factor.
Transient transfection experiments indicate that the Oct-1, NF-Y, and AP-1 binding elements all have roles in the regulation of mGnRHR gene expression. Although individual mutations of the Oct-1 and NF-Y binding sites decreased both basal expression of the mGnRHR gene and stimulation by GnRH, the combined mutation of both sites did not show any further reduction. This result suggests that both binding sites must be intact for Oct-1 and NF-Y to affect mGnRHR gene expression. Similarly, both Oct-1- and NF-Y-binding sites have been shown to be necessary for the histone deacetylase inhibitor-induced activation of the Gadd45 gene promoter, despite the absence of demonstrable protein-protein interactions between these two factors (49).
Mutations in the consensus AP-1 binding site at 274/268 of the mGnRHR gene promoter have been reported previously to decrease GnRH responsiveness in
T31 cells (7, 13). Consistent with these reports, in the present study, a single base pair mutation of the AP-1 consensus sequence reduced the response to GnRH. This effect is consistent with previous observations that GnRH regulation of the mGnRHR gene is mediated, at least in part, by activation of PKC, leading to increased protein binding to the AP-1 element (7, 13). The AP-1 element is important for basal expression of the mGnRHR gene as well as for GnRH responsiveness (17). Interestingly, the combined mutation of the Oct-1 and AP-1 binding sites abolished both basal and GnRH-stimulated transcriptional activity of the mGnRHR gene promoter (Fig. 6
). POU proteins cooperate with many transcription factors including AP-1 (50, 51, 52). Recently, it was reported that Oct-1 activates the profilaggrin promoter in cooperation with c-Jun, and that binding of both factors at their respective recognition sites is essential for the cooperation (53). Therefore, together with the present data, evidence supports the possibility of cooperative interaction between Oct-1 and AP-1 in the regulation of mGnRHR gene expression. Whereas the coupling of PKC signaling induced by GnRH to AP-1 transactivation of gene expression has been well described (29), the relationship of GnRH signaling to Oct-1 transcriptional activity is not yet known. Further studies will be necessary to detail the function of Oct-1 and its interaction with NF-Y and AP-1 in the regulation of mGnRHR gene transcription.
Complex C is not yet identified in the present study. This complex was weak in intensity, suggesting either lower protein abundance or reduced DNA affinity. The TAAT sequence is necessary for its binding, suggesting that it may also be a homeodomain protein and/or Oct-1-related protein. Complex C was competed partially by the Oct-1 consensus oligonucleotide but not recognized by anti-Oct-1 or -Oct-2 antibody. Interestingly, when the Oct-1 consensus oligonucleotide or the S1 oligonucleotide modified to an Oct-1 consensus sequence was used as probe, complex A was increased whereas complex C decreased, suggesting competition with Oct-1 for binding to the same site. Studies to identify the protein(s) in complex C are ongoing.
In summary, we have identified Oct-1 and NF-Y binding sites in the SURG-1 element of the mGnRHR gene promoter. These transcription factors are functionally involved in both basal expression and GnRH regulation of the mGnRHR gene, both independently and through possible interactions with the canonical AP-1 element.
| MATERIALS AND METHODS |
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T31 and LßT2 cells were generously provided by Dr. Pamela Mellon (University of California, San Diego).
Plasmids
A 1.2-kb fragment of the 5'-flanking region of the mGnRHR gene was ligated into the luciferase reporter vector, pXP2, as described previously (designated 1164/+62 mGnRHR-Luc) (15). The nucleotide sequence of the mGnRHR gene promoter used in this study is based on previous work in this laboratory (15), with 1 assigned to the nucleotide immediately 5' of the major transcription start site. Mutations were introduced into 1164/+62 mGnRHR-Luc by site-directed mutagenesis, using the QuikChange Site-Directed Mutagenesis kit (Stratagene, La Jolla, CA) with selected sense and antisense oligonucleotides, following the manufacturers instructions. Specific nucleotide changes introduced are detailed in Results. An expression vector expressing ß-galactosidase driven by the simian virus 40 (SV40) promoter (SV40-ß-gal) was used as an internal standard and control. The mouse wild-type and DN NF-YA expression vectors were kindly provided by Dr. Roberto Mantovani (30).
Cell Culture and Transfection Studies
T31 and LßT2, mouse gonadotrope-derived cell lines (54, 55), were maintained in monolayer culture in high-glucose DMEM. CV-1 (African green monkey kidney fibroblast) cells were maintained in low-glucose DMEM. All media were supplemented with 10% (vol/vol) fetal bovine serum, 100 U/ml penicillin, and 100 µg/ml streptomycin sulfate. All cells were maintained at 37 C in humidified 5% CO2-95% air.
For transient transfection studies, cells were divided into six-well tissue culture plates and cultured overnight in DMEM. When cells reached 4050% confluence, cells were transfected by calcium phosphate coprecipitation as described previously but with minor modifications (7). Briefly, in experiments to study effects on GnRH responsiveness, cells were incubated with calcium phosphate-DNA precipitates for 4 h in media containing 10% (vol/vol) fetal bovine serum. In each experiment, a luciferase reporter plasmid (2 µg/well) was added along with SV40-ß-gal (1 µg/well), used as an internal standard. After the 4-h transfection, cells were washed once at room temperature with PBS (pH 7.4). Thereafter, cells were treated with 100 nM GnRH agonist or vehicle in 10% serum-containing DMEM for 4 h, followed by harvest. These conditions were selected after optimization analysis to give maximal GnRH responsiveness. For studies of basal expression, cells were transfected under the same conditions described above, except a 20-h transfection and only 0.5 µg/well SV40-ß-gal was used. After the incubation, medium was aspirated, and cells were washed once with ice-cold PBS. Cells were lysed in the wells by addition of 200 µl lysis buffer [125 mM Tris (pH 7.6), 0.5% (vol/vol) Triton X-100]. Cellular debris was removed from the lysate by centrifugation at 14,000 x g for 10 min at 4 C. Supernatants were assayed immediately for luciferase and ß-galactosidase activity by standard protocols. Briefly, luciferase activity was determined by adding 100 µl of cell lysate to 200 µl of luciferin substrate (Pharmingen, San Diego, CA) and measuring luminescence with a Monolight 2010 luminometer (Analytical Luminescence Laboratory, San Diego, CA) set for a 20-sec integration with no delay. ß-Galactosidase activity was determined by adding 80 µl of cell lysate to 300 µl of substrate [0.1M Na2HPO4 (pH 7.3), 0.013 M 2-nitrophenyl-ß-D-galactopyranoside, 0.1% (vol/vol) 0.1M MgCl2, 0.35% (vol/vol) ß-mercaptoethanol], incubating overnight at 37 C, and measuring colorimetrically at 410 nm in a Beckman DU640 spectrophotometer (Beckman, Fullerton, CA) after the addition of 100 µl of 0.1 M sodium carbonate. Luciferase activity was normalized to expression of SV40-ß-galactosidase.
For overexpression of NF-YA, the NF-YA, DN NF-YA, or corresponding pSG5 control expression vectors (0.5 µg/well) were cotransfected in
T31 cells along with a luciferase reporter plasmid (0.5 µg/well) and SV40-ß-gal (0.5 µg/well) using GenePORTER transfection reagent (Gene Therapy Systems Inc., San Diego, CA) with Opti-MEM I (Invitrogen Co., Carlsbad, CA) as serum-free medium according to the manufacturers protocol. After transfection, cells were incubated for 4 h in serum-free conditions, after which an equal volume of 20% fetal bovine serum-DMEM was added and cells were further incubated for an additional 20 h until harvest.
Preparation of Nuclear Extracts
T31, LßT2, and CV-1 cells were grown to approximately 5060% confluence and treated with 100 nM GnRH agonist or vehicle for 1 or 4 h. Thereafter, cells were harvested, and nuclear extracts were prepared by the method of Andrews and Faller (56).
EMSA
Two complementary strands of synthetic oligonucleotides were annealed in annealing buffer (100 mM NaCl; 10 mM Tris·Cl, pH 8.0; and 1 mM EDTA), and the annealed oligonucleotides were purified by electrophoresis on a 10% polyacrylamide gel using the QIAEX II gel extraction kit (QIAGEN, Valencia, CA). The oligonucleotides were 5'-end labeled with [
-32P]ATP by T4 polynucleotide kinase (New England Biolabs, Beverly, MA). Labeled oligonucleotides were purified using a nick column nucleotide removal kit (Amersham Life-Science, Piscataway, NJ). The binding reaction for EMSA was performed by incubating 200,000 cpm of DNA probe with 5 µg of nuclear extract and 1 µg of salmon sperm DNA in reaction buffer [20 mM HEPES (pH 7.9), 60 mM KCl, 5 mM MgCl2, 2.5 mM phenylmethylsulfonyl fluoride, 2 mM dithiothreitol, 1 mg/ml BSA, and 5% (vol/vol) glycerol] for 30 min at 4 C. For competition studies, excess unlabeled oligonucleotide (500x) was added 5 min before the addition of probe. Supershift experiments were carried out by adding the indicated antibodies (0.5 µg) to the reaction mixtures 1 h before probe was added. Protein-DNA complexes were resolved by 5% low-ionic strength nondenaturing polyacrylamide gel electrophoresis in 0.5x Tris borate/EDTA buffer (45 mM Tris-HCl, pH 8.0; 45 mM boric acid; 1 mM EDTA). Gels were dried for 1 h and subjected to autoradiography for 2448 h.
ChIP Assay
T31 cells were treated with 100 nM GnRH agonist for 0, 1, or 4 h, after which cells were fixed with 1% formaldehyde at room temperature for 10 min. Cross-linked DNA was sonicated to fragments ranging from 200500 bp in length. After cell lysis and sonication, the supernatant was diluted 5-fold in ChIP dilution buffer (0.01% sodium dodecyl sulfate; 1.1% Triton X-100; 1.2 mM EDTA; 16.7 mM Tris, pH 8.1; 167 mM NaCl; 1 µg/ml leupeptin; 1 µg/ml aprotinin; and 1 mM phenylmethylsulfonylfluoride) before incubation with antibodies. ChIP was carried out by the addition of 10 µg of Oct-1, NF-YA, or c-Jun antibody or normal rabbit serum as a negative control. Ten percent of the sample volume was reserved for use as input control. Cross-linking was reversed by incubation at 65 C for 6 h. DNA was subsequently purified using Qiaquick columns (QIAGEN). PCR was performed using 3 µl of DNA as template for 35 cycles, using primers spanning the SURG-1 element (337/170; sense: 5'-GTATCTGTCTAGTCACAACAG-3'; antisense: 5'-TCCTGAAGGCCAAGTGTAACC-3').
RNA Interference
Oct-1 siRNA was purchased from Santa Cruz Biotechnology, Inc. A scrambled siRNA for use as a negative control with a randomly generated 21-nucleotide sequence was prepared using the siRNA Construction Kit (Ambion, Inc., Austin, TX).
T31 cells were seeded into six-well culture plates 1 d before transfection. On d 1, the cells (3040% confluence) were washed with PBS and transfected with 50 nM Oct-1 or scrambled siRNA using transfection reagent (Santa Cruz Biotechnology). The cells were incubated with siRNAs for 24 h. Total RNA from siRNA-transfected cells was then extracted using Tri reagent (Sigma-Aldrich, St. Louis, MO) according to the manufacturers guidelines. Total RNA (1 µg) was subjected to reverse transcription using random hexamer and Maloney murine leukemia virus reverse-transcriptase (Ambion). The reverse transcription product (1 µl) was subsequently used for quantitative real-time PCR using the ABI Prism 7000 (Applied Biosystems, Foster City, CA). Oct-1 and GnRHR mRNA levels were normalized to GAPDH mRNA levels. The PCR primer sets used are as follows: Oct-1 sense, 5'-TTCAGTGCAGTCAGCCATTC-3'; antisense, GGCTTTGCTGAGGTAGTTGC-3'; GnRHR sense, 5'-CAGCTTTCATGATGGTGGTG-3'; antisense, 5'-TAGCGAATGCGACTGTCATC-3'; GAPDH sense, 5'-CGTCCCGTAGACAAAATGGT-3'; antisense, 5'-TCTCCATGGTGGTGAAGACA-3'.
Statistical Analysis
Transfections were performed in triplicate and repeated multiple times. Data in each experiment were expressed as luciferase/ß-galactosidase activity. Data were combined across experiments, and the results were expressed as mean ± SE for basal and GnRH agonist-stimulated activities for each construct. ANOVA followed by post hoc comparisons with Fishers protected least significant difference test was used to determine whether changes in basal activity or in GnRH agonist responsiveness among different GnRHR promoter-luciferase reporter constructs were significant and with Tukey test for overexpression and siRNA experiments. Significant differences were designated as P < 0.05.
| ACKNOWLEDGMENTS |
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T31 and LßT2 cells and Dr. Roberto Mantovani for the wild-type and DN NF-YA expression vectors. | FOOTNOTES |
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First Published Online September 23, 2004
Abbreviations: AP-1, Activating protein-1; CDP, CCAAT displacement protein; C/EBP, CCAAT/enhancer binding protein; ChIP, chromatin immunoprecipitation; DN, dominant negative; GAPDH, glyceraldehyde-3-phosphate dehydrogenase; GnRHR, GnRH receptor; NF-Y, nuclear factor Y; SF-1, steroidogenic factor 1; siRNA, small interfering RNA; SURG, Sequence Underlying Responsiveness to GnRH; SV40, simian virus 40.
Received for publication January 22, 2004. Accepted for publication September 16, 2004.
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