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Stazione Zoologica Anton Dohrn, 80121 Napoli, Italy
Address all correspondence and requests for reprints to: Roberto Di Lauro, Stazione Zoologica Anton Dohrn, Villa Comunale 1, 80121 Napoli, Italy. E-mail: dilauro{at}szn.it.
| ABSTRACT |
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| INTRODUCTION |
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The rat epithelial thyroid cell line FRTL-5 retains in culture the expression of several thyroid-specific genes such as thyroglobulin (Tg), thyroperoxidase (TPO), TSH receptor (Tshr) and Na+/I symporter (NIS), thyroid oxidase (ThOX-2), Pendred syndrome gene (PDS) as well as a thyroid-specific combination of transcription factors, Titf1 (also indicated as TTF-1), Foxe1 (formerly called TTF-2) and Pax8, that are considered essential for the maintenance of differentiation. In addition, these cells depend on the presence of TSH for proliferation and are able to concentrate iodide from the medium (8, 9, 10, 11).
We have previously shown that cell lines obtained by infecting FRTL-5 cells with either Harvey or Kirsten rat sarcoma viruses show loss of the differentiated phenotype (12, 13). Harvey-transformed FRTL-5 (FRTL-5/Ha-RAS) cells showed detectable levels of Titf1, which was instead undetectable in Kirsten-transformed (FRTL-5/Ki-RAS) cells, thus suggesting that the molecular mechanisms underlying the observed de-differentiation should be different among the oncogenes encoded by the two viruses (13). Nevertheless, such experiments suffered from several limitations. First of all, because two different retroviruses were used for the transduction of v-Ha-RAS and v- Ki-RAS, it is possible that viral sequences other than the transduced oncogenes could be responsible for the observed differences. Second, retrovirus-infected cells were selected from the uninfected cells by their ability to grow in the absence of TSH, thus adding a selection for highly transformed cells. Finally, the retrovirus-infected FRTL-5 cells were maintained for an indeterminate number of passages in culture, making it possible that the observed differences were due to the differential rate of accumulation of other mutations in the diverse cell lines examined.
Recently, by using a different experimental approach, we demonstrated that the cellular oncogene H-RASV12 transiently expressed in FRTL-5 cells is able to inhibit the transcriptional activity of Titf1 through multiple effector pathways, including the Raf/MAPK pathway and an unknown pathway activated by the as-yet-uncharacterized RAS effector domain mutant V12N38 (14).
In the present study, we systematically compared the effects of different RAS oncogenes on the expression of endogenous thyroid-specific genes. We also, for the first time in thyroid cells, systematically correlated the observed biological effects with the amount of RAS protein expressed.
We established numerous FRTL-5 cell clones, stably expressing either one of the viral oncogenes v-Ha-RAS, v-Ki-RAS, or the activated cellular isoform H-RASV12. The clones were obtained either by selection for antibiotic resistance, or by selection for growth in the absence of TSH and antibiotic resistance. This dual mode of selection was designed to study the interference of oncogenic RAS on the differentiated thyroid phenotype, both in the presence and absence of selective pressure for transformation.
The FRTL-5/RAS clones obtained in this study were subjected to a detailed quantitative analysis of the whole differentiated status, revealing that loss of differentiation is only induced at high levels of active RAS. Similar results were also obtained with a tamoxifen-inducible RAS molecule.
Finally, to further our understanding on the molecular mechanisms responsible for the induction of dedifferentiation by high levels of oncogenic RAS, we tested the function of two transcription factors essential for the maintenance of thyroid differentiation, Titf1 and Pax8, in both the constitutive and inducible systems. We demonstrate that RAS is able to interfere with Titf1 and Pax8 by inhibiting both their expression and transcriptional activity. We have previously demonstrated that the inhibition of Titf1 activity is exerted through its activation domains (14). Here we show that also the homeodomain of Titf1 is inhibited by Ras, whereas the inhibition of Pax8 activity appears to be exerted exclusively on its activation domains.
| RESULTS |
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RAS Oncogenes Modulate the Whole Thyroid Differentiation Program in a Dose-Dependent Fashion
The data presented in the previous section show a dose-dependent inhibitory effect of RAS oncogenes on Titf1 and Tg protein expression. We then asked whether a decrease of the corresponding mRNA accounts for the reduction of the two proteins. We also asked whether the other known thyroid differentiation markers are similarly regulated by RAS. To address these questions, the levels of mRNAs encoding all known thyroid-specific or enriched proteins were analyzed by real-time quantitative RT-PCR (QPCR) in FRTL-5/RAS clones. The mRNAs measured encoded the following proteins: Tg, TPO, NIS, Tshr, ThOX-2, PDS, and the transcription factors Titf1, Foxe1, and Pax8. The mRNA level of a housekeeping gene,
-1 tubulin, was also measured in each sample for normalization. The cellular clones subjected to the QPCR analysis were selected using the following criteria: 1) 10 clones were selected for each oncogene, for a total of 30 clones; 2) for each oncogene, five were chosen from those selected in the presence of TSH, and five from those selected in the absence of TSH (Fig. 1
); 3) clones expressing different levels of oncoprotein, as assessed by QWB (Fig. 1
) were selected for each transfected oncogene. Total RNA was extracted from selected clones and wild-type FRTL-5 cells, and processed for QPCR analysis, as indicated in Materials and Methods. After normalization of input cDNA for
-1 tubulin transcripts, mRNA levels for each gene were reported as the percentage of the levels measured in parental FRTL-5 cells (Fig. 2
, A and C). For each of the three oncogenes, we observed a clear loss of differentiation-specific gene expression only when activated RAS is expressed not less than 10-fold over the endogenous level, with no difference between the three different oncogenes (Fig. 2A
). For the majority of the analyzed genes, a threshold exists around 10-fold overexpression of the oncogenes respect to endogenous RAS, thereby defining the boundary between normally differentiated and de-differentiated clones. Such a dose-dependent Ras effect is even more evident if we average the expression of each gene for the clones below (low RAS) or above the threshold (high RAS), as shown in Fig. 2
, B and D. The slight increase in expression of the differentiation markers at low Ras level shown in panel B are not statistically significant.
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A Tamoxifen-Dependent RAS Oncogene Rapidly Dedifferentiate FRTL-5 Only when Expressed at High Levels
To confirm and extend the dose-dependent effects of RAS in a different experimental context, we generated a novel inducible system in FRTL-5 cells expressing a conditional RAS oncoprotein, obtained by fusing H-RASV12 downstream of a tamoxifen (4OHT)-sensitive mutant of the estrogen receptor ligand binding domain (ERTMLBD) (ERTM-RAS, see Materials and Methods). FRTL-5 cells were transfected with an expression construct encoding both ERTM-RAS and neomycin resistance and subjected to different selections. A portion of the transfected population was subjected to a neutral selection for G418 resistance in a complete medium, including TSH, which is necessary for proliferation of FRTL-5 cells. An equivalent portion of cells were selected for G418 resistance in the absence of TSH but in the presence of 4OHT, to select for cells made TSH-independent for growth by the activated RAS. Finally, to test whether RAS was under tight control by ERTMLBD, we subjected a similar number of transfected cells to selection for G418 resistance in the absence of both TSH and 4OHT. After 2 wk of continuous selection, cells were fixed and stained with crystal violet (Fig. 3A
). As expected, numerous G418-resistant colonies were generated both in the presence of TSH and in the absence of TSH with 4OHT, whereas no colonies were obtained in the absence of TSH without 4OHT, demonstrating that the chimeric oncogene is able to induce TSH-independent growth of FRTL-5 cells only in the presence of tamoxifen. From parallel dishes selected in complete medium, individual colonies were picked, expanded and tested for ERTM-RAS expression. We analyzed the effects of RAS activation on Tg expression in clones expressing either low or high levels of ERTM-RAS and in parental FRTL-5 cells, as a control. Cells were treated 24 h with 4OHT, or left untreated, and total proteins were analyzed by Western blot. In Fig. 4B
, a representative Western blot is shown with two clones expressing low levels and two clones expressing high levels of the chimeric oncogene. All clones expressed wild-type levels of Tg in the absence of 4OHT, but only those expressing high levels of ERTM-RAS showed a tamoxifen-dependent decrease in Tg expression (Fig. 3B
). It is noteworthy that tamoxifen induces an increase in the ERTM-RAS protein levels (Fig. 3B
), as has also been observed for other ER-fusion proteins, presumably due to the stabilization of the chimera by the binding of tamoxifen (17, 18).
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We measured the expression of Tg, NIS, Tshr, Titf1, Foxe1, and Pax8 in one representative high RAS clone (clone 11, see panel B) by QPCR, after 24 h of RAS induction by tamoxifen (Fig. 3E
). All markers analyzed showed a decrease in their mRNA level after induction of RAS activity, albeit to different extents. This experiment demonstrated that the down-regulation of thyroid differentiation markers by RAS is exerted through a rapid decrease of their mRNAs. It was conceivable, however, that the marked decrease of Tshr expression could be responsible for the decrease of all the other markers because TSH is required for the maintenance of thyroid differentiated phenotype. To address this point, we tested the time course of Tg disappearance in the absence of TSH and after RAS induction in clones with high RAS, by comparing them with clones with low RAS and with parental FRTL-5 cells (Fig. 3F
). After 3 d of 4OHT treatment in medium lacking TSH, Tg protein was undetectable in high RAS-expressing cells, whereas it remained unchanged in low RAS and in parental cells (Fig. 3F
). These latter two showed only a slight decrease in Tg protein levels after an additional 4 d of treatment (Fig. 3F
, d 7). These data strongly suggest that RAS is able to directly inhibit the expression of Tg, by exerting its effect independently from Tshr signaling.
We then asked whether the different outcomes of high vs. low levels of RAS oncogenes in dedifferentiating thyroid cells lie in their ability to inhibit or not the activity of thyroid transcription factors. To this aim, we analyzed the activity of Titf1 and Pax8, that have been demonstrated to be important for thyroid-specific gene expression (19) using artificial promoters specific for each of the two transcription factors. Two reporter constructs, bearing a 5x repeat of either the Titf1 binding site (C5) or the Pax8 binding site (Cp5) upstream of a CAT reporter gene (9) were transiently transfected in FRTL-5/ERTM-RAS clones expressing high or low amounts of the inducible oncoprotein, and promoter activity was measured in the presence or absence of tamoxifen. A dramatic reduction of Titf1 and Pax8 transcriptional activity was only induced by tamoxifen in clones expressing high levels of ERTM-RAS (Fig. 3G
), suggesting that the loss of thyroid-specific gene expression induced by RAS is due to the inhibition of these transcription factors.
TITF1 Activity Is Inhibited by Multiple Mechanisms in High RAS-Expressing FRTL-5 Cells
We have previously demonstrated that Titf1 is inhibited at the posttranslational level by RAS in FRTL-5 cells (14). To establish whether the residual Titf1 protein present in clones expressing low levels of RAS oncogenes was transcriptionally active (see Fig. 1
, EG), we performed a series of promoter activity assays on selected clones. Clones expressing different levels of one of the three oncogenes were transiently transfected with the Titf1-specific reporter C5-CAT alone or together with an expression construct encoding either wild-type Titf1 or a chimeric protein obtained by the fusion of the homeodomain of Titf1 (HD) and the vp16 activation domain (HDvp16). The activity of the C5 promoter in each clone was expressed as a percentage of the cytomegalovirus (CMV)-chloramphenicol acetyl transferase (CAT) reporter activity, after normalization for transfection efficiency. As shown in Fig. 4
, the clones expressing less RAS oncogene, showed a C5 activity comparable with that observed in the parental FRTL-5 cells. Conversely, the C5 driven expression was very low in all lines with high RAS expression, independently of the oncogene used. Overexpression of either Titf1 or HDvp16 was not able to restore C5 activity in these cells (Fig. 4
, AC), suggesting that RAS may also act at a posttranscriptional level. To check the expression of the ectopic transcription factors in transiently transfected cells, transfection experiments were repeated with 3xFLAG-tagged versions of Titf1 and HDvp16. Although the 3xFLAG-Titf1 was well expressed and easily detectable by Western blot, the 3xFLAG-HDvp16 was expressed at very low levels and barely detectable (Fig. 4C
, bottom panel), even though it seems to be expressed at similar levels in all clones analyzed. To measure the ability of the two proteins in activating the Titf1-specific reporter C5 in thyroid as well as in nonthyroid cells, parental FRTL-5 and HeLa were transfected similarly to the FRTL-5/RAS clones. Both Titf1 and HDvp16 were unable to overactivate the C5 reporter in FRTL-5 cells, where it is already very active (Fig. 4D
). Conversely, in HeLa cells, where the C5 reporter is totally inactive, both proteins are able to strongly activate it (Fig. 4D
), with HDvp16 being more potent than Titf1.
Taken together, these results suggest that in the presence of high levels of RAS oncoproteins both the synthesis and the activity of Titf1 can be inhibited. Interestingly, RAS oncogenes are able to inhibit the function of both Titf1 and the fusion protein HDvp16, bearing only the homeodomain of Titf1. Because the activation domain of vp16 is not inhibited by RAS when fused to other DNA binding domains (see below), we suggest that the Titf1 DNA binding domain could be a target of the inhibitory activity of RAS.
RAS Inhibits Titf1 and Pax8 Activity by Acting through Different Domains
To further investigate the ability of RAS in repressing the activity of HDvp16, we asked whether the inhibitory effect was exerted through the Titf1 homeodomain or the vp16 moiety. To ascertain this, three FRTL-5/RAS clones (one for each oncogene) were transiently transfected with the reporter constructs specific for Titf1 or Pax8. The Titf1-specific reporter C5-CAT was cotransfected with either wild-type Titf1 or the already described HDvp16 chimera, whereas the Pax8-specific reporter, was cotransfected with either wild-type Pax8 or a fusion protein bearing the paired-domain of Pax8 fused to the vp16 transactivation domain (PDvp16). To check the specificity of RAS repression on thyroid-specific transcription, and to exclude the possibility that inhibition of the chimeric transcription factors could be mediated by their vp16 moiety, a GAL4-responsive promoter, bearing five repeats of the GAL4 binding site upstream of a CAT reporter gene (G5-CAT), was transfected in parallel, stimulated by a GAL4vp16 chimeric transcription factor (Fig. 5A
). Cp5 basal activity was strongly inhibited in all three clones, showing that RAS is able to inhibit Pax8. The inhibition by RAS is specific for thyroid-specific reporters because activation of the G5 promoter by GAL4vp16 was not inhibited by RAS. Unlike that observed for Titf1, Pax8 expression is able to weakly reactivate its reporter, whereas the PDvp16 chimera appears to be fully functional, being able to strongly activate the Cp5 promoter. Importantly, the absence of RAS inhibitory effects on both PDvp16 and GAL4vp16 chimeras allowed us to exclude that the inhibition observed with HDvp16 was exerted through its vp16 moiety.
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Taken together, these data confirmed that RAS inhibition of Titf1 is exerted at least in part through its DNA binding domain. Conversely, RAS appears to inhibit Pax8 by a different mechanism because the DNA binding domain of Pax8 is not affected by RAS, as demonstrated by the complete rescue of Cp5 activity by PDvp16.
| DISCUSSION |
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RAS family GTPases regulate key steps in the transduction of extracellular signals, and, hence, their activity has to be finely tuned (23, 24). The complexity of RAS function is further underlined by recent data suggesting tumor suppressor properties of wild-type RAS alleles (25, 26, 27, 28). Transfection of wild-type HRAS into rat fibroblasts inhibits anchorage-independent growth and colony formation, induced by the oncogenic RAS allele (25). Furthermore, in vivo, wild-type KRAS2 can inhibit oncogenic RAS-induced lung carcinogenesis in mice (26), and very recently it has been shown that human lung tumors bearing activating mutations in one KRAS2 allele, frequently show the loss of the wild-type allele (28). This evidence reveals a critical role for the balance between the amount of RAS oncoproteins and the wild-type RAS in the process of malignant transformation. In accordance with these observations, our data show the requirement of high RAS oncoproteins overexpression to achieve the loss of the differentiated phenotype, at least 10-fold over the endogenous wild-type RAS. It is conceivable that, also in this case, the balance between the oncogenic and wild-type RAS proteins instead of the absolute level of oncoprotein, is the factor controlling the threshold for thyroid dedifferentiation.
To validate these novel results in a different experimental setting, we established an inducible RAS system, in which a mutant of the ligand binding domain of the estrogen receptor (LBD-ERTM) (29) is fused to H-RASV12 resulting in a chimeric RAS oncogene (ERTMRAS) whose activity is tamoxifen dependent. Recently, a very similar molecule has been independently reported (30). The chimeric RAS that we generated is subjected to a very tight tamoxifen control because induced TSH-independent growth of FRTL-5 cells occurs only in the presence of tamoxifen. Clones expressing different levels of such protein were isolated and differentiation markers were analyzed after ERTMRAS induction by tamoxifen. Similarly to what observed in FRTL-5/RAS clones, only clones expressing high levels of ERTMRAS were dedifferentiated by the induction of the oncogene. Furthermore, this system allowed us to analyze the effects of RAS activity at very early time points, demonstrating that RAS is able to dedifferentiate FRTL-5 cells rapidly after its induction, hence showing that inhibition of thyroid differentiation appears to be a direct and early effect of RAS oncogenic activation.
RAS-induced alterations in the differentiated thyroid phenotype, as assessed by QPCR, were quite complex. The analysis of the complete panel of thyroid-specific genes revealed different alterations for diverse classes of genes. Proteins required for the physiologic function of the adult thyrocyte, namely Tshr and NIS, the enzymes TPO and ThOX-2 and the thyroid hormones precursor Tg, are all strongly down-regulated as a result of RAS oncogene overexpression. Among transcription factors known to play a role in thyroid differentiation, Pax8 appears to be as sensitive to RAS inhibition, whereas Titf1 and Foxe1 are much less repressed even by high levels of RAS. In the majority of high-RAS clones, in fact, Titf1 protein is undetectable while maintaining relatively high levels of Titf1 mRNA. Hence, our data indicate that RAS down- regulates Titf1 mainly by posttranslational mechanisms leading to the loss of protein expression. Interestingly, one of the nine markers analyzed, pendrin (PDS), showed a marked up-regulation by RAS, independently of the levels of oncogene expressed. PDS is a recently characterized apical transporter of iodide in thyroid follicular cells and is the gene causing the Pendred syndrome (11, 31, 32). Even very low levels of RAS oncogenes were able to strongly induce the overexpression of PDS that hence appears to be controlled by RAS with mechanisms different from those regulating all other thyroid-specific or thyroid-enriched genes. Pendrin expression has been measured previously in thyroid tumors (33, 34, 35), and it has been also proposed to be methylated early in the process of thyroid tumorigenesis (36). We suggest that, in thyroid tumors where RAS is activated, there could be a prevalence of Pendrin expression and that presence of Pendrin could be a marker of poorly differentiated or anaplastic cancers.
We have previously shown that RAS oncogenes expressed in thyroid cells exert an inhibitory action on Titf1 and Pax8 activity, as demonstrated by the use of the Titf1- and Pax8-specific reporters C5 and Cp5, respectively (14, 37). Here, by using an inducible system, we demonstrate that only high levels of RAS are able to inhibit Titf1 and Pax8 activity, whereas lower levels, sufficient for the stimulation of TSH-independent proliferation, are unable to inhibit their transcriptional activity. We also demonstrated that the inhibition of Titf1 is mediated by its DNA binding domain because a chimera obtained by the fusion between the Titf1 homeodomain and the transactivation domain of the transcriptional coactivator vp16 is also inhibited by RAS. On the contrary, the chimera bearing the paired-domain of Pax8 fused to vp16 is able to rescue the inhibition exerted by RAS on the Pax8-specific promoter, both in stable clones and in transiently RAS-expressing FRTL-5, implying that the Pax8 DNA binding domain is not a target of RAS.
The action of RAS on the thyroid-specific transcriptional apparatus is controversial. It has been reported that the DNA binding activity of Titf1 is inhibited by RAS via a phosphorylation-dependent mechanism (38). Other reports have demonstrated that thyroid cells expressing oncogenic H-RAS contain Titf1 that is capable of binding DNA but unable to activate transcription (13). We suggest that the discrepancies could be to the use of diverse transformed cell lines kept for long time in culture and to the absence of controls for the amounts of RAS. Further studies on the inducible RAS system that we have developed, should control for both variables and help resolve the mechanism used by RAS to dedifferentiate thyroid cells.
In conclusion, this paper represents the first evidence of a correlation between the extent of RAS oncogene expression and the loss of thyroid differentiated phenotype. We also show that the three RAS oncogenes analyzed exert similar effects on thyroid phenotype. The use of a novel inducible system revealed that inhibition of differentiation is an early effect elicited only by high levels of RAS oncogenes in FRTL-5 cells. Finally, we provide some evidence on the mechanisms responsible for RAS-induced dedifferentiation, suggesting that interference with transcription factors activity, either at the transactivation or DNA binding level might be involved in RAS inhibition of the expression of thyroid-specific genes.
We suggest that some of these mechanisms might be operating in human thyroid cancers, where the extent of dedifferentiation is directly linked to the severity of the prognosis. It is conceivable that the elucidation of the mechanism operating in the dedifferentiation of cultured cells might provide some insights for a redifferentiating therapy of anaplastic thyroid cancers.
| MATERIALS AND METHODS |
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Cell Culture and Transfection
Rat thyroid follicular FRTL-5 cells were maintained in Coons modified F12 medium (EuroClone, Milano, Italy) supplemented with 5% newborn bovine serum (HyClone, Logan, UT) and six growth factors (6H), including TSH (1 mU/ml), and insulin (10 µg/ml) as previously described (8) (6H medium). For experiments performed in the absence of TSH, the medium was identical with the complete medium above described (6H medium), but TSH was not added (5H medium). All transfections on FRTL-5 cells were carried out by the use of FuGene 6 (Roche Molecular Biochemicals, Indianapolis, IN) following the manufacturers instructions. For stable transfection experiments, FRTL-5 cells were plated at 20% confluency in 100-mm dishes and transfected with 2 µg/dish of pBabePuro encoding v-Ha-RAS, v-Ki-RAS, H-RASV12, or the empty vector. Forty-eight hours later, transfected cells were selected either in 6H medium or in 5H medium, in the presence of 1 µg/ml of puromycin (Sigma). After 2 wk of continuous selection in the indicated conditions, for each experimental point single colonies were selected from one dish, whereas a twin dish was stained with crystal violet and colonies counted.
Bromodeoxyuridine incorporation assays were performed as previously described (37). Briefly, the cells were seeded in chamber slides in complete medium. After 48 h, cells were switched to low serum medium (Coons modified F12 medium with 0.2% newborn bovine serum) for 72 h, then stimulated with 6H or 5H medium. After 24 h of incubation, cells were subjected to a 2-h BrdU pulse.
For cell proliferation assays, 105 cells were seeded in 60-mm dishes in 6H medium for 48 h, medium was then substituted with 5H medium or 5H medium with the addition of 100 nM tamoxifen, where indicated, and cell number was determined at the indicated times.
For transient transfection experiments, cells were plated at 40% confluency in 60-mm dishes and C5-CAT reporter plasmid (2.5 µg) was transfected with the different expression vectors as indicated in the figure legends. After 48 h, cells were lysed in lysis buffer [10 mM HEPES (pH 7.9), 400 mM NaCl, 0.1 mM EGTA, 0.5 mM dithiothreitol, 5% glycerol, and 0.5% phenylmethylsulfonyl fluoride]. Luciferase and chloramphenicol acetyltransferase (CAT) activities were measured as previously described (41, 42). Briefly, CAT activity was measured by incubation with 5 mM chloramphenicol and 0.1 µCi of [3H] acetyl-coenzyme A (1.4 Ci/mmol, 50 µCi/ml). Reactions were performed in the presence of water-insoluble scintillation fluid (Econofluor-2; Packard Bioscience, Meriden, CT) at 37 C and counted after 5 h. Luciferase activity was measured in the presence of 0.2 mM D-luciferin (Sigma) in a Lumat LB 9501 luminometer (Berthold Technologies, Bad Wildbad, Germany).
Immunoblotting
Whole cell lysate of stable FRTL-5/RAS clones were prepared in sample buffer and protein concentration was measured by the BCA protein assay reagent (Pierce, Rockford, IL), following the manufacturers instructions. Western blots were performed as previously described (14). Rabbit polyclonal antibodies against Tg, TITF1, Foxe1, and Pax8 previously produced in our laboratory were used at approximately 1 µg/ml (13). Anti-RAS rat monoclonal antibodies (259) were purchased from Santa Cruz Biotechnology (Santa Cruz, CA). Immune complexes were detected by enhanced chemiluminescence as instructed by manufacturer (Amersham Biosciences, Arlington Heights, IL). ANTI-FLAG M2 antibody was purchased from Sigma. For QWB, chemiluminescence was captured and analyzed with a Fluor-S MAX MultiImager (Bio-Rad, Hercules, CA) supported by the Quantity One 4.1 software (Bio-Rad).
RNA Extraction, cDNA Synthesis, and QPCR
Total RNA was isolated from FRTL-5/RAS clones and the parental FRTL-5 by the acid guanidinium thiocyanate/phenol procedure (43). Four micrograms of total RNA from each cell line were used as a template for the synthesis of the first strand cDNA, starting from random hexamers, using the Superscript II Reverse Transcriptase kit (Invitrogen Life Technologies, Carlsbad, CA) according to manufacturers instructions. QPCR was conducted using an ABI Prism 7000 sequence detection system and SYBR Green chemistry (PE Biosystems, Foster City, CA). Reactions were carried out in duplicate or triplicate, which were executed in identical well positions in different runs, using cDNA obtained from 50 ng of total RNA per reaction as template. Specific primer sets for each gene (sequences available upon request) were designed using their known cDNA sequence and the program Primer Express. For all QPCR experiments, the output raw data from each cDNA sample were internally normalized against the
-1 tubulin mRNA in each sample. Throughout the text and the figures, the QPCR results for each FRTL-5/RAS clone are presented as percent of parental FRTL-5 levels, whereas the values measured in FRTL-5/ERTMRAS cells treated with 4OHT are presented as percent of the value measured in the same cells left untreated. Both calculations used the formula 1.94
Ct, where 1.94 is the multiplier for amplification per PCR cycle, and the exponent
Ct is the cycle threshold difference with
-tubulin found for that sample.
| ACKNOWLEDGMENTS |
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| FOOTNOTES |
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Current address for V.M.C.d.C.: Instituto de Biofisica Carlos Chagas Filho, Universidade Federal do Rio de Janeiro, CCS-Bloco G, 21949-900 Rio de Janeiro, Brazil.
First Published Online September 23, 2004
Abbreviations: CAT, Chloramphenicol acetyl transferase; CMV, cytomegalovirus; H-RASV12, oncogenic form of cellular RAS; NIS, Na+/ I symporter; 4OHT, tamoxifen; PDS, Pendred syndrome gene; QPCR, quantitative RT-PCR; QWB, quantitative Western blotting; Tg, thyroglobulin; ThOX-2, thyroid oxidase; TPO, thyroperoxidase; Tshr, TSH receptor; v-Ha-RAS or v-Ki-RAS, two forms of viral RAS.
Received for publication April 27, 2004. Accepted for publication September 17, 2004.
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