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Coactivator, through Proline-, Glutamic Acid-, and Leucine-Rich Protein-1 (PELP1)Molecular and Cellular Oncology (A.E.G., S.P., R.K.), The University of Texas M. D. Anderson Cancer Center, Houston, Texas 77030; Obstetrics and Gynecology (R.K.V.), University of Texas Health Science Center at San Antonio, San Antonio, Texas 78229; and Molecular and Cellular Biology (R.K.), Baylor College of Medicine, Houston, Texas 77030
Address all correspondence and requests for reprints to: Rakesh Kumar, Molecular and Cellular Oncology, Unit 108, The University of Texas M. D. Anderson Cancer Center, 1515 Holcombe Boulevard, Houston, Texas 77030. E-mail: rkumar{at}mdanderson.org.
| ABSTRACT |
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. However, the role of ER
coactivators in the regulation of BCAS3 expression remains unknown, and information regarding the function of the BCAS3 protein is lacking. Here, we define the contribution of ER
coactivators to BCAS3 regulation and identify BCAS3 itself as an ER
coactivator in breast cancer cells. We found that PELP1 (proline-, glutamic acid-, and leucine-rich protein-1), a newly described ER
coregulator, is recruited to BCAS3 chromatin and activates its expression. Analysis of the BCAS3 sequence for functional motifs and evidence from biochemical fractionation suggested that BCAS3 acts as a transcriptional coactivator. Results from chromatin immunoprecipitation, reporter assays, and expression studies further validated the coactivator function of BCAS3 for ER
. BCAS3 physically associated with histone H3 and histone acetyltransferase complex protein P/CAF (p300/CBP-associated factor) and possessed histone acetyltransferase activity. Unexpectedly, BCAS3 required PELP1 to function as a coactivator in ER
transactivation activity. In brief, these results highlight a mechanism whereby ER
activation triggers a positive feedback loop leading to signal amplification in the cell. | INTRODUCTION |
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and ERß, with the estrogen-responsive elements (EREs) in the promoters of responsive genes. ERs can also regulate gene expression by associating with other promoter-bound transcription factors, such as activator protein-1 and SP-1. Estrogen-mediated activation of genes including cyclin D1, c-myc, c-fos, EBAG9, pS2, and cathepsin D is induced through the coordinated recruitment of ERs and specific coactivators to the genes promoters. The recruitment of coactivators, including steroid receptor coactivator (SRC)-1, AIB1/SRC-3, glucocorticoid receptor-interacting protein 1 (GRIP1), p300/cAMP response element binding protein-binding protein (CBP), p300/CBP-associated factor (P/CAF), and PELP1/MNAR (proline-, glutamic acid-, and leucine-rich protein-1/modulator of nongenomic activity of ER), to ER-bound promoters increases estrogen-regulated transcriptional activation (3, 4).
Biochemical and functional data suggest that PELP1/MNAR is a unique coactivator that participates in both genomic and nongenomic responses to ER signaling (4, 5). The action of PELP1 as an ER coactivator seems to be specific because an independent study confirmed that PELP1 coactivates ER but corepresses glucocorticoid receptors and non-nuclear receptor sequence-specific transcription factors, including activator protein-1, nuclear factor
B, and ternary complex factor/serum response factor (6). It was also recently reported that PELP1, which is up-regulated by retinoic acid acts as a coactivator of the retinoid X receptor pathway (7). PELP1 interacts with transcriptional activators such as CBP and p300 in vivo, suggesting that PELP1 functions as an ER coactivator by enhancing the recruitment of histone acetyltransferases (HATs) to increase ligand-mediated gene expression (8). Furthermore, PELP1 has been shown to induce chromatin remodeling by displacing histone H1 and has functional interactions with retinoblastoma protein that explains in part its role in ER genomic functions (9). PELP1 has also been shown to participate in estrogen receptor nongenomic signaling by activation of Src kinase (10).
Breast carcinoma amplified sequence-3 (BCAS3) is a gene of unknown function that is localized to 17q23, a chromosomal region amplified in approximately 20% of primary breast tumors, as assessed by comparative genomic hybridization (11). Amplification of 17q23 appears to be more common in high-grade tumors and is associated with poor prognosis, suggesting that genes affected by this amplification have a crucial role in breast cancer progression (11). Copy number gains at 17q23 have also been reported in tumors of the brain, lung, bladder, testis, and liver (12). The involvement of BCAS3 in breast cancer progression is further suggested by reports that BCAS3 is amplified in breast cancer cell lines (mainly ER+ cell lines) and in approximately 10% of primary breast tumors analyzed (13). Furthermore, overexpression of BCAS3 in primary breast tumors is associated with tumor grade and proliferation (14). In addition, the last two exons of BCAS3 can be translocated to 20q13, another commonly amplified region in breast cancers, resulting in a fusion product that is highly overexpressed in MCF-7 cells (13).
Recently, we showed that BCAS3 is an estrogen-inducible gene because ER
is recruited to a regulatory region of BCAS3 via a half ERE (1/2 ERE) (14). However, the role of ER
coactivators in the regulation of BCAS3 expression is not known, and information regarding the function of the BCAS3 protein is also lacking. In this study, we identify PELP1, an ER
coactivator, as a regulator of BCAS3 expression in response to estrogen. Unexpectedly, we also report a coactivator role of BCAS3 for ER
in breast cancer cells.
| RESULTS |
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in regulating BCAS3 expression (14), we sought to identify the nature of coactivators of ER
that are involved in this regulation. We first conducted a preliminary screen by cotransfecting MCF-7 cells with a luciferase vector containing the BCAS3 regulatory region to which ER
binds and expression vectors for various known coactivators of ER
. The activity of the reporter gene increased in response to PELP1 expression (Fig. 1C
The enhancer function of PELP1 was confirmed in another breast cancer cell line, ZR-75, in which overexpression of PELP1 resulted in increased estrogen-induced reporter gene activity (Fig. 1D
). Similar results were obtained in two other estrogen-responsive endometrial cell lines, Hec1A and Ishikawa (Fig. 1D
). In contrast, PELP1 did not significantly activate reporter gene expression in response to estrogen in two ER
-negative salivary gland cell lines HSG and HSY (15) (Fig. 1D
), suggesting that PELP1-induced activation of BCAS3 via the BCAS3 enhancer sequence seems to be tissue specific.
Role of PELP1 in BCAS3 Expression
To confirm the finding that PELP1 modulates the expression of BCAS3 via the BCAS3 regulatory region, we examined the recruitment of PELP1 to the BCAS3 region in the second intron encompassing about 600 bp (17427070–17427655) (14). Immunoprecipitation of T7 epitope-tagged PELP1 from MCF cells stably expressing PELP1 (9), followed by PCR amplification of the BCAS3 enhancer sequence, indicated that PELP1 is strongly recruited to the BCAS3 regulatory region upon estrogen induction (Fig. 2A
).
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(Fig. 2B
(Fig. 2C
A time course of estrogen treatment in PELP1-teton cells showed that T7-PELP1 was strongly recruited to the BCAS3 regulatory region within 15 min of stimulation and remained associated with the sequence for up to 1 h without derecruitment (Fig. 2D
, left panel), indicating that PELP1 might be continuously needed for BCAS3 gene expression. We performed ChIP analysis using ER
in the same system to validate that ER
pathway was active in these cells (Fig. 2D
, left panel). We next performed ChIP analysis using antibodies raised against the endogenous PELP1 protein after treatment of estrogen for various time points. Results showed that PELP1 was recruited by 15 min with a maximal recruitment by 30 min (Fig. 2E
, please compare lanes 1, 2, and 3). As observed with the transfected protein, PELP1 remained associated with the regulatory region of BCAS3 until 90 min of estrogen treatment (Fig. 2E
, lane 6).
Transfection of BCAS3-luciferase reporter into PELP1-overexpressing MCF-7 cells induced reporter gene expression upon estrogen stimulation (Fig. 2F
). RT-PCR analysis of BCAS3 mRNA in PELP1-overexpressing teton clones indicated that BCAS3 mRNA is up-regulated upon stimulation with doxycycline (Fig. 2G
). These results were corroborated by Northern blot analysis in stable MCF-7 clones constitutively overexpressing PELP1 (Fig. 2H
), showing that the level of PELP1 is positively associated with BCAS3 expression. To rule out the possibility that a factor required for BCAS3 expression might be squelched by overexpression of PELP1 in MCF7 cells, we knocked down PELP1 in MCF7 cells and looked for BCAS3 expression by Western blotting analysis. Use of scrambled RNA interference (RNAi) as a control demonstrated that BCAS3 expression was stimulated by estrogen treatment (Fig. 2I
, lanes 1 and 2) as previously reported (14). Under PELP1 knockdown conditions, BCAS3 levels were decreased both in basal as well as estrogen stimulated conditions (Fig. 2I
, lanes 3 and 4) indicating that PELP1 is required for BCAS3 expression in MCF7 cells. Collectively, these results demonstrate that PELP1 is a coactivator with a prominent role in the regulation of BCAS3 gene expression in an ER
-dependent manner.
Coactivator Function of BCAS3
To determine the possible physiological consequences of PELP1 and ER
regulation of BCAS3, we sought to elucidate the role of BCAS3 in breast cancer cells. Analysis of the BCAS3 protein sequence for functional motifs using the GenomeNet MOTIF search (http://motif.genome.jp) revealed the presence of a bromodomain, an atypical zinc-finger motif, three WD-40 domains, four potential DNA-binding domains, and two phosphorylated kinase-inducible activation domains (Fig. 3A
), motifs that are typically found in a variety of transcriptional coactivators (16).
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transactivation responses (data not shown), we formulated the working hypothesis that BCAS3 is a transcriptional coactivator. To explore this idea, we first fractionated MCF-7 cells to yield purified cellular components and analyzed BCAS3 expression in the different compartments by Western blotting. Substantial amounts of BCAS3 protein were extracted with Nonidet P-40 buffer, suggesting that some BCAS3 was present in the soluble fraction (Fig. 3B
was present in the cytoplasm/nucleoplasm, chromatin, and nuclear matrix fractions, but most of the ER
was found in the chromatin fraction (Fig. 3B
Because BCAS3 was strongly associated with the chromatin fraction, we next determined whether BCAS3 could be recruited onto a classic ER
-induced promoter, such as that of pS2, in MCF-7 cells. MCF-7 cells were transfected with a T7-BCAS3 expression vector and stimulated with estrogen. The cells were then subjected to ChIP analysis using a T7-specific antibody and PCR amplification of the pS2 promoter using primers against the ER
-binding region (17). BCAS3 was found to occupy the promoter region under basal conditions, and estrogen stimulation increased its occupancy on the promoter, as is typically seen with ER
coactivators (Fig. 3C
, left panel). We also performed ChIP analysis with ER
-specific antibody under the same conditions as a positive control for our experiment (Fig. 3C
, left panel). An aliquot of the cells were used for Western blotting analysis to verify expression of T7-BCAS3 in the transfected cells (Fig. 3C
, right panel). Next, we sought to validate the recruitment of endogenous BCAS3 protein to the proximal regions of estrogen response elements of E2-responsive genes in vivo using ChIP assay. ZR-75 cells were treated with E2 for 45 min, and BCAS3-bound chromatin was immunoprecipitated, eluted, and PCR amplified using primers that are specific to the ERE gene promoters such as trefoil factor 1 precursor (pS2), and c-myc. Results showed increased recruitment of PELP1 to pS2, and c-myc promoters in response to estrogen treatment (Fig. 3D
). In addition, we used ER
ChIP on pS2 promoter as a positive control and ChIP for BCAS3 on actin promoter as a negative control (Fig. 3D
).
To determine whether BCAS3 occupancy of the promoter results in transcriptional activation of the pS2 gene, a pS2 promoter-luciferase reporter was transfected into MCF-7 cells along with various concentrations of either pcDNA (control) or the T7-BCAS3 vector. Transfection of BCAS3 increased pS2 promoter activity by up to fivefold compared with transfection of pcDNA (Fig. 3E
). Next we determined the effect of BCAS3 on the regulatory region of pS2-luciferase reporter vector in response to estrogen signaling. Cotransfection of BCAS3 expression plasmid with pS2-luciferase reporter vector resulted in increased reporter activity. Interestingly, estrogen stimulation did not augment the activity of the reporter gene (Fig. 3F
) indicating that although BCAS3 has a specific role in regulating pS2 gene, overexpression of BCAS3 appeared to saturate pS2 reporter expression in estrogen-stimulated situation. However, depletion of BCAS3 from MCF-7 cells using BCAS3-specific small interfering RNA (siRNA) resulted in down-regulation of reporter gene activity under both basal and estrogen-induced conditions (Fig. 3G
), suggesting that BCAS3 is an important coactivator of ER
in breast cells. Efficient knockdown of BCAS3 was confirmed by RT-PCR (Fig. 3G
, inset). The effect of BCAS3 on estrogen-induced pS2 expression was confirmed by the finding that pS2 mRNA expression decreased in response to estrogen in the presence of BCAS3 siRNA but not in the presence of control scrambled siRNA (Fig. 3H
).
BCAS3 as an ER
-Interacting Partner
The above findings demonstrated that both BCAS3 and ER
reside in the chromatin fraction and that BCAS3 induces the expression of classic ER
-responsive genes in response to estrogen in breast cancer cells. We therefore looked for a physical association between BCAS3 and ER
. In a glutathione S-transferase (GST)-pull-down assay, recombinant GST-BCAS3 protein coprecipitated 35S-labeled ER
efficiently, whereas the control GST did not (Fig. 4A
, top panel). Ponceau staining of the blot used in the above experiment indicate loading of the GST-tagged ER
and GST control proteins (Fig. 4A
, bottom panel).
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in a physiological setting, we subjected cellular extracts to coimmunoprecipitation and Western blot analysis using ER
-specific and control IgG antibodies. When ER
was immunoprecipitated from MCF-7 cells, BCAS3 coprecipitated with ER
as determined by Western blotting (Fig. 4B
was very specific (Fig. 4B
on the same blot confirmed the efficient immunoprecipitation and expected decrease in ER
expression after ICI-182780 treatment (Fig. 4B
To identify the BCAS3-binding regions of ER
, a series of GST-tagged deletion constructs of ER
were used in a GST-pull-down assay with in vitro-translated BCAS3. BCAS3 did not bind to any of the ER
deletion constructs but efficiently interacted with the full-length protein, suggesting that the fully folded ER
is necessary for interaction with BCAS3 (Fig. 4C
, top panel). Ponceau staining of the blot used in the above experiment indicates equal loading of the proteins (Fig. 4C
, bottom panel).
The in vivo interaction between ER
and BCAS3 was further substantiated using coimmunoprecipitation studies. Immunoprecipitation of BCAS3 and Western blotting for ER
showed that the endogenous proteins interact with one another in a physiological setting (Fig. 4D
, lane 3). This interaction was specific because immunoprecipitation of BCAS3 in the presence of ICI-182780 did not result in coimmunoprecipitation of ER
protein (Fig. 4D
, lane 4). Because the BCAS3 amino acid sequence does not have the typical NR boxes (LXXLL motifs), we next mapped the ER
-binding site in BCAS3. The full-length BCAS3-GST fusion protein, but not GST, efficiently interacted with the 35S-labeled full-length ER
protein. GST-tagged BCAS3 deletion mutants were then used in a GST-pull-down assay with in vitro-translated ER
. We mapped the ER
-binding domain of BCAS3 to the construct C of the protein because the deletion construct encompassing this region of BCAS3 was sufficient for strong binding to ER
, whereas removal of this region abolished binding (Fig. 4E
, left panel, construct C). The deletion construct, construct C, includes the bromodomain motif (Fig. 4E
, right panel) and thus, our finding implicates the bromodomain in the role of BCAS3 as a coactivator of ER
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Physical Interaction of BCAS3 with PELP1
We next asked whether PELP1, a known coactivator of ER
, interacts with BCAS3, a newly identified ER
coactivator (this study). We next examined the in vivo protein-protein interaction between BCAS3 and PELP1 using coimmunoprecipitation studies. We first used anti-T7 antibody and T7-PELP1-overexpressing stable MCF7 clones for the coimmunoprecitation/Western blotting studies (9). Immunoprecipitation of T7-PELP1 and Western blotting for BCAS3 in MCF-7/PELP1 cells showed that the proteins interact with one another in a physiological setting (Fig. 5A
, top panel). As a control, we used MCF-7/pcDNA clones simultaneously and observed no interaction, indicating that the interaction seen in MCF-7/PELP1 cells was specific. The same blot was reprobed with the anti-T7 antibody to demonstrate efficient immunoprecipitation of T7-PELP1 (Fig. 5A
, lower panel). To establish the physiological nature of the BCAS3-PELP1 interaction, we showed that immunoprecipitation of endogenous PELP1 resulted in coimmunoprecipitation of BCAS3 in ZR-75 cells (Fig. 5B
). Likewise, immunoprecipitation of endogenous BCAS3 resulted in coimmunoprecipitation of PELP1 (Fig. 5C
), indicating that both BCAS3 and PELP1 interact with each other in vivo.
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In vitro interaction of BCAS3 and PELP1 was also established by a GST-pull-down assay, in which T7-PELP1derived from PELP1 stable clone coprecipitated with GST-BCAS3 (Fig. 5E
, left panel, lane A). To map the region of BCAS3 that interacts with PELP1, we used GST-tagged deletion constructs of BCAS3 in a GST-pull-down assay with T7-PELP1. Among the deletion constructs, only the one encompassing the bromodomain efficiently interacted with PELP1 (Fig. 5E
, left panel, lane C). Together, these results suggest that PELP1 and BCAS3 physically interact with each other under physiological conditions.
Mechanism of Coactivator Function of BCAS3
Having established that BCAS3 acts as a coactivator of ER
by physically interacting with ER
and its coactivator PELP1, we sought to dissect the mechanism of the coactivator functions of BCAS3. Because bromodomains in protein have been shown to be important for binding to acetylated histone tails (16), we used far-Western analysis with 35S-labeled BCAS3 and histones H1 and H3 immobilized on a membrane to determine whether BCAS3 interacts directly with the histones. There was robust association between BCAS3 and histone H3 (Fig. 6A
, upper panel). The blot was stained using Ponceau-S to affirm equal loading of proteins (Fig. 6A
, lower panel).
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Because BCAS3 promoted transcription from the estrogen-inducible promoter and interacted effectively with ER
target gene chromatin (Fig. 3
, C–H), we suspected that BCAS3 could influence the status of chromatin remodeling, presumably through HAT activity. We therefore examined whether such activity was intrinsic or associated with T7-BCAS3. Immunoprecipitation analysis revealed increased functional HAT activity associated with T7-BCAS3 in estrogen-induced MCF-7 cells (Fig. 6D
).
We next examined whether BCAS3 interacts with HAT enzymes or other coactivators. To that end, T7-BCAS3 was transfected into MCF-7 cells, and immunoprecipitation was carried out 48 h later using T7-specific antibody followed by Western blotting for P/CAF. P/CAF coprecipitated with BCAS3; this interaction was very specific because immunoprecipitation from control vector-transfected cells did not pull-down P/CAF (Fig. 6E
). These findings indicated that the ER
-coactivating function of BCAS3 after estrogen stimulation might occur through modulation of the chromatin structure via associated HAT activity.
Cooperative Interactions between BCAS3 and PELP1
The finding that BCAS3 is present in the ER
coactivator complex led us to ask whether BCAS3 depends on PELP1 for its function as an ER
coactivator. Stable MCF-7 clones expressing T7-PELP1 were transiently transfected with myc-tagged BCAS3. Forty-eight hours later, the cells were cross-linked with formaldehyde and subjected to ChIP analysis using anti-myc antibodies to immunoprecipitate myc-tagged BCAS3. Elutes from the first ChIP were reimmunoprecipitated with T7-specific antibody to immunoprecipitate any associated T7-PELP1 molecules. Results from this double-ChIP experiment indicated that BCAS3 and PELP1 were recruited to the pS2 promoter region together in E2-stimulated cells (Fig. 7A
), suggesting in vivo existence of an active BCAS3/PELP1 complex.
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Our next goal was to elucidate the role of PELP1 in the coactivator function of BCAS3. We first screened PELP1 and BCAS3 expression in HeLa, MCF-7, and ZR-75 cells. HeLa and MCF-7 cells expressed high amounts of both BCAS3 and PELP1, whereas ZR-75 expressed moderate amounts of BCAS3 and very low amounts of PELP1 protein (Fig. 7C
). Because BCAS3 also exists as a fusion protein with BCAS4 in MCF-7 cells (13), we used HeLa cells as a model to implicate PELP1 in BCAS3 coactivator function. We verified whether BCAS3 could activate pS2 in HeLa cells with exogenous expression of ER
. As shown in Fig. 7D
, overexpression of T7-BCAS3 in HeLa cells strongly induced pS2-luciferase reporter activity in the presence of ER
, as seen in ER
-positive cells. Knockdown of PELP1 expression by PELP1-specific siRNA (7) in HeLa cells transfected with ER
and pS2-luciferase reporter resulted in decreased activation of the reporter in both basal and estrogen-stimulated conditions when T7-BCAS3 was overexpressed (Fig. 7E
). These results suggested that BCAS3 coactivator function is mediated, at least in part, through its interaction with PELP1. The inset shows efficiency of knockdown of PELP1 in these cells.
To show that PELP1 is essential for BCAS3 coactivator function, we used MCF-7 cells stably expressing either wild-type (PELP1-WT) or a mutant of PELP1 that is unable to bind to histone H1 and lacks the ability to activate transcription (PELP1-H1) (9). We transfected myc-tagged BCAS3 into PELP1-WT and PELP1-H1 cells and performed double-ChIP experiments as described above. Myc-BCAS3 was recruited to the pS2 promoter along with PELP1-WT in response to estrogen stimulus, as demonstrated previously; in contrast, we found no recruitment of myc-BCAS3 and the PELP1-H1 mutant (Fig. 7F
). This finding indicated that the ability of PELP1 to bind and displace histone H1 might be essential for the recruitment of BCAS3 onto pS2 chromatin. We corroborated this finding in a pS2-luciferase reporter assay in which cotransfection of BCAS3 and PELP1-H1 did not lead to enhanced activation of the reporter, whereas cotransfection of BCAS3 and PELP1-WT increased the activity of pS2-luciferase, as reported earlier (Fig. 7G
). In conclusion, we demonstrate here that BCAS3 and PELP1 act cooperatively to enhance ER
genomic functions in the cell and that the H1-displacing activity of PELP1 might be important for BCAS3 coactivator function.
| DISCUSSION |
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in response to estrogen stimulation (14). In the present study, we further define the ER
coactivator molecule(s) that regulate BCAS3 expression and identify the BCAS3 protein itself as an ER
coactivator. The fact that BCAS3 could be induced by estrogen and is an ER
coactivator suggests that this is a mechanism for signal amplification in the cell. Estrogen-inducible BCAS3 is itself a coactivator of ER
and is up-regulated and amplified in breast cancers. Our study underscores this autocrine regulation by ER
, which could be an important way of amplifying ER
signaling in breast cancer cells (Fig. 8
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that we tested in our system—were incapable of activating the BCAS3 reporter system. There are two possible reasons: either these coactivators require additional binding regions on BCAS3 chromatin to activate BCAS3 expression, or the p160 family is not involved in ER
regulation of BCAS3. The latter seems to be a more likely explanation because coactivators have been reported to demonstrate preferential association with nuclear receptors depending on the genetic context that the nuclear receptor regulates (3, 18, 19, 20).
Functional characterization of BCAS3 allowed us to conclude that it is an ER
coactivator. Whether it is specific for ER
or has similar effects on other nuclear receptors remains to be determined. It is of interest that BCAS3 was ineffective as a coactivator for ER
in the context of synthetic promoters (3X ERE; data not shown) but was able to induce reporter gene expression from natural promoters such as pS2 and PELP1. This result emphasizes the physiological importance of BCAS3 as an ER
coactivator. Furthermore, as seen in Fig. 3F
, overexpression of BCAS3 stimulated pS2 gene expression only under basal conditions and knockdown of BCAS3 resulted in down-regulation of reporter gene activity under both basal and estrogen-induced conditions (Fig. 3G
). This suggests that BCAS3 is an important regulator of pS2 gene in breast cells. Because BCAS3 has been shown earlier to be overexpressed in breast tumors (14) and could lead to tamoxifen resistance (21), it implies that overexpression of BCAS3 in the physiological setting could lead to estrogen independence of the breast cells. However, this is a hypothesis that still need to be supported by an independent investigation. Also, because BCAS3 lacks the typical LXXLL motif found in most coregulators of nuclear receptors (17), we speculated that the interaction occurs through either a hitherto-unidentified motif or another protein. Because we were able to pull down BCAS3 along with ER
in an in vitro GST-pull-down assay, the presence of an intermediary linker protein seems unlikely. Our results demonstrated that the region encompassing the bromodomain in BCAS3 is the ER
-interacting region. This agrees well with previous studies in which bromodomains were found in classic coactivator molecules (16). There is no known nuclear localization signal in BCAS3, and the protein is distributed in both the cytoplasmic and nuclear compartments of the cell, suggesting that BCAS3 has unidentified functions outside of its role as a coactivator.
| MATERIALS AND METHODS |
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Mouse Studies
For the in vivo estrogen stimulation studies, four 4-wk-old ovariectomized female athymic nude mice (Charles River, Wilmington, MA) were implanted with a 60-d-release estrogen pellet. The mice were killed 6 wk later, and their mammary glands were dissected and used for extraction of proteins. All animal procedures were performed in compliance with our Institutional Animal Care and Use Committee guidelines and the National Institutes of Health Policy on Humane Care and Use of Laboratory Animals.
RNA in Situ Hybridization
To prepare digoxigenin-labeled cRNA probes for in situ hybridization, cDNA fragments of the BCAS3 were subcloned into the vector pDP18 (Ambion, Austin, TX), and linearized with XbaI for antisense probe, and SacI for sense probe respectively. The probes were synthesized using in vitro transcription with a digoxigenin RNA labeling kit (Roche Diagnostics, Indianapolis, IN). Mammary gland tissues were fixed in 4% paraformaldehyde, sectioned, and processed for in situ hybridization using standard procedures (22).
Plasmid Construction and Generation of GST-Tagged BCAS3 Deletion Constructs
Full-length BCAS3 cDNA was purchased from OriGene Technologies (Rockville, MD) and subcloned into the EcoR1 and XbaI sites of pcDNA3.1 (Invitrogen, Carlsbad, CA) vector (forward primer, 5'-GCGAATTCTATGAATGAAGCTATGGCTACAG-3'; reverse primer, 5'-GCAGGTTGCTCTAGACTACGGGAAGCCAGTCGG-3'). Full-length BCAS3 was also subcloned into the EcoR1 and Not1 sites of the pGEX 5X3 vector (Amersham, Piscataway, NJ); forward primer, 5'-GCGAATTCTATGAATGAAGCTATGGCTACAG-3'; reverse primer, 5'-GCAGGTTGCGGCCGCCTACGGGAAGCCAGTCG-3') and into the EcoR1 and Not1 sites of the pCMV vector (Stratagene, La Jolla, CA) (forward primer, 5'-GCGAATTCGTATGAATGAAGCTATGGCTACAG-3'; reverse primer, 5'-GCAGGTTGCGGCCGCCTACGGGAAGCCAGTCGG-3').
Deletion constructs of PELP1 (7) and ER
(8) have been previously described. BCAS3 deletion constructs were generated using PCR followed by cloning into pGEX 5X1. Deletion A used EcoR1 and Xho1 with primers 5'-CTTGTGGAATTCGATTCTGACAGTGATGGC-3' and 5'-GTTCAATCTCGAGCTCTCCAGCACTTTTCTGGAAACG-3'; deletion B used EcoR1 and Not1 with primers 5'-CAAGCAGCGAATTCGGGTCACCCTTGCATGGG-3' and 5'-CCCAGCGGCCGCAGGGGGAACCAGGCC-3'; and deletion C used EcoR1 and Xba1 with primers 5'-CAATGGAATGAATTCCAGCCACCGTTTAATGCAAAC-3' and 5'-GCAGGTTGCTCTAGACTACGGGAAGCCAGTCGG-3'.
Transient Transfections and Luciferase Assay
Transient transfection studies were done using FuGENE 6 transfection reagent following the recommended protocol (Roche Molecular Biochemicals). The luciferase assay was done using a Promega luciferase assay system (Promega, Madison, WI).
ChIP Assay
The ChIP assay was conducted as reported previously (23). Antibodies against myc (NeoMarkers, Fremont, CA), ER
(Chemicon International, Temecula, CA), T7 (Novagen, Darmstadt, Germany), BCAS3 (Bethyl Laboratories, Montgomery, TX) or PELP1 (Bethyl Laboratories) were used to immunoprecipitate protein-bound chromatin. The precipitated DNA was then amplified using specific primers for the BCAS3 enhancer (forward, 5'-CCTGAAGATGCCTCCTAGACA-3'; reverse, 5'-CCCTTCCCTCCCTCATTTATT-3'),the pS2 promoter (forward, 5'-GAATTAGCTTAGGCCTAGACGGAATG-3'; reverse, 5'-AGGATTTGCTGATAGGACAGAG-3'), the c-myc promoter (forward, 5'-CCGAAAACCGGCTTTTATAC-3'; reverse, 5'-CTGAGTCTCCTCCCCACCTT-3'), and the actin promoter (forward, 5'-AGTGCCCAAGAGATGTCCAC-3'; reverse, 5'-TCGAGCCATAAAAGGCAACT-3').
RT-PCR and Northern Blot Analysis
Total RNA from cells was extracted using TRIzol reagent (Invitrogen). After deoxyribonuclease treatment, RT-PCR was done using Access RT-PCR kit (Promega) with primers for BCAS3 (forward, 5'-GAAGAATGGCTTTCCCAGGT-3'; reverse, 5'-GTCACGCTCCTGTCAAAGG-3') and actin (forward, 5'-GGACTTCGAGCAAGAGATGG-3'; reverse, 5'-ACATCTGCTGGAAGGTGGAC-3'). Northern blot analysis was done as described previously (23).
Subcellular Protein Extraction
Cellular components were sequentially extracted using a widely adopted biochemical fractionation and sequential extraction procedure (9). The purity of the isolated fractions was established by Western blot analysis of marker proteins.
siRNA Transfection
siRNA transfections were performed using Oligofectamine (Invitrogen) according to the manufacturers protocol. BCAS3 siRNA was purchased from QIAGEN (Valencia, CA), and PELP1 siRNA and control-scrambled siRNA were purchased from Dharmacon (Lafayette, CO).
GST-Pull-Down Assay
In vitro transcription and translation of BCAS3, and ER
were done using a T7-TNT kit (Promega). The procedure used for the binding studies with GST-tagged proteins and 35S-labeled proteins was described previously (23). For GST-pull-down studies of PELP1 with deletion constructs of BCAS3, T7-PELP1 overexpressing cells were lysed in RIPA lysis buffer to obtain the cell lysate. The cell lysate was diluted with NP-40 lysis buffer and appropriate quantities of GST-tagged constructs of BCAS3 immobilized on Sepharose beads was added to equal amounts of the cell lysate. Subsequent to rotation for 3 h at 4 C, the beads were washed thoroughly and the bound proteins were resolved on SDS-polyacrylamide gel, transferred to a nitrocellulose membrane and subjected to Western blot analysis using T7 antibody (Bethyl Laboratories).
Cell Extracts, Immunoprecipitation, and Western Blot Analysis
For immunoprecipitation of ER
, cells were suspended in high-salt lysis buffer [0.5 M NaCl, 50 mM Tris-HCl (pH 8.0), and 25 µM EDTA]. Cell lysates were diluted with no-salt buffer and immunoprecipitation was performed for 3 h at 4 C using anti-ER
antibody (1 µg antibody per mg protein). Immunoprecipitated proteins were resolved on SDS-polyacrylamide gel, transferred to a nitrocellulose membrane, and subjected to Western blot analysis. For immunoprecipitation of T7-tagged BCAS3, endogenous BCAS3 or endogenous PELP1, radioimmunoprecipitation assay lysis buffer [10 mM Tris-HCl (pH 7.4), 1% Triton X-100, 0.1% sodium deoxycholate, 0.1% SDS, and 0.1 M NaCl] was used to lyse cells, and immunoprecipitation and Western blotting were performed as described earlier (7, 23).
Far-Western Analysis
Far-Western analysis using 35S-labeled BCAS3 was performed as described previously (9, 24).
HAT Assay
T7-tagged BCAS3 was expressed in MCF-7 breast cancer cells. The HAT assay was performed using a HAT-Check activity assay kit (Pierce, Rockford, IL) as described earlier (9, 24).
| ACKNOWLEDGMENTS |
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| FOOTNOTES |
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This study was supported in part by National Institutes of Health Grants CA098823 and CA90970 (to R.K.).
First Published Online May 15, 2007
Abbreviations: BCAS3, Breast carcinoma amplified sequence-3; ChIP, chromatin immunoprecipitation; E2, 17ß-estradiol; ER, estrogen receptor; ERE, estrogen-responsive element; GST, glutathione S-transferase; HAT, histone acetyltransferases; MNAR, modulator of nongenomic activity of ER; P/CAF, p300/CBP-associated factor; PELP1, proline-, glutamic acid-, and leucine-rich protein-1; RNAi, RNA interference; siRNA, small interfering RNA.
Received for publication December 1, 2006. Accepted for publication May 10, 2007.
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