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Departments of Biochemistry (D.B.H., C.-C.C., C.R.M.) Obstetrics & Gynecology (C.R.M.), and Pharmacology (B.A.J.), North Texas March of Dimes Birth Defects Center, The University of Texas Southwestern Medical Center at Dallas, Dallas, Texas 75390-9038
Address all correspondence and requests for reprints to: Carole R. Mendelson, Department of Biochemistry, The University of Texas Southwestern Medical Center at Dallas, 5323 Harry Hines Boulevard, Dallas, Texas 75390-9038. E-mail: carole.mendelson{at}utsouthwestern.edu.
| ABSTRACT |
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B inhibitor, I
B
. In 28 breast cancer cell lines, I
B
expression was positively correlated with PR mRNA levels; overexpression of a phosphorylation-defective mutant of I
B
inhibited expression of aromatase, COX-2, and HER-2/neu. Moreover, in breast cancer cell lines cultured in the absence of progesterone, up-regulation of endogenous PR caused decreased expression of aromatase, COX-2, and HER-2/neu expression, whereas down-regulation of endogenous PR resulted in a marked induction of aromatase and HER-2/neu mRNA. Collectively, these findings suggest that PR plays an important antiinflammatory role in breast cancer cells via ligand-dependent and ligand-independent mechanisms. | INTRODUCTION |
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and ERβ, plays a predominant role in development and growth of breast cancer. Estrogen synthesis from C19-steroids is catalyzed by aromatase, an enzyme complex that comprises aromatase P450 (product of the CYP19 gene) and reduced nicotinamide adenine dinucleotide-cytochrome P450 reductase (1). Aromatase, the key regulatory enzyme in estrogen biosynthesis (2), is up-regulated in 70% of all human breast cancers (3) and is expressed both in tumor and in adjacent adipose stromal and endothelial cells (3). Thus, induction of aromatase within and surrounding the breast tumor can result in high local levels of estrogen production that stimulate tumor growth. CYP19 expression in human estrogen-producing tissues and in breast cancer is controlled by unique promoters that lie upstream of tissue-specific first exons (4). These first exons are alternatively spliced onto a common site just upstream of the translation initiation codon in exon II. Whereas the aromatase mRNAs in these different tissues have unique 5'-untranslated regions, the sequences encoding the aromatase protein are identical. In human breast tumors and surrounding adipose stromal cells, aromatase is up-regulated via switching from the weak adipose-specific promoter (I.4) to the strong ovarian (IIa) (5) and so-called "breast cancer" (I.3) (6) promoters. Promoter I.3 lies just upstream of promoter IIa; consequently, both share important regulatory elements. Switching from promoter I.4 to promoters IIa and I.3 is likely mediated by induction of cyclooxygenase 2 (COX-2) in the breast tumor (3, 7) (see below), resulting in increased prostaglandin E2 (PGE2) synthesis by breast tumor epithelial cells and infiltrating macrophages (5).
Breast tumor progression is promoted by activation of proliferative and inflammatory response pathways. Notably, the inflammatory transcription factor nuclear factor
B (NF-
B) appears to play an important role in normal mammary gland development and in breast carcinogenesis. Increased levels of I
B kinase activity and nuclear NF-
B and NF-
B DNA-binding activity have been observed in human breast cancer cell lines and in breast cancer specimens (see Ref. 8 for review). NF-
B is a major transcriptional regulator of COX-2, the rate-determining and highly regulated enzyme in prostanoid biosynthesis, which is overexpressed in breast cancer (9). COX-2 up-regulation is associated with increased aromatase (3) and enhanced expression of the tumorigenic marker, HER-2/neu (10). Furthermore, overexpression of HER-2/neu in NIH-3T3 fibroblasts increased COX-2 and aromatase activity (10). The finding that COX-2 inhibition blocked HER-2/neu induction of aromatase suggests that prostanoids mediate this induction (10). HER-2/neu and COX-2 appear to exist in a positive feedback loop, whereby HER-2/neu increases COX-2 transcription, and elevated COX-2, via PGE2, induces HER-2/neu expression (11).
It has long been appreciated that the presence of progesterone receptor (PR) in a breast tumor is an independent predictor for benefit from adjuvant endocrine therapy and of disease-free survival (12, 13, 14). Breast tumors that are PR(–) have a much higher proliferation rate and are more likely to manifest increased expression of the tumorigenic prognostic indicators, HER-2/neu and epidermal growth factor receptor, than PR(+) tumors (15, 16, 17, 18). Because PR is an estrogen-induced target gene, it has been suggested that its presence serves as an indicator of ER functional capacity and differentiation status of the tumor (19). However, we propose that PR may have independent protective actions that involve antagonism of inflammatory response pathways. In recent studies, we observed that small interfering RNA (siRNA)-mediated knockdown of PR-A and PR-B in T47D breast cancer cells caused activation of NF-
B and a 30-fold induction of COX-2 mRNA (20). This was observed in the absence of exogenous progesterone, suggesting that PR exerts a ligand-independent action to inhibit NF-
B activation. Interestingly, we observed in cultured human myometrial cells that PR also acts in a progesterone-dependent manner to mediate increased expression of the NF-
B inhibitor, I
B
(20).
In the present study, we tested the hypothesis that PR acts in a ligand-dependent and -independent manner to inhibit NF-
B activation, thereby blocking inflammatory response pathways, expression of oncogenic growth factor receptors, and aromatase induction in breast cancer cells. We observed that progesterone treatment of breast cancer cells antagonized the stimulatory effects of cAMP and IL-1β on aromatase, HER-2/neu, and COX-2 expression. These actions were associated with increased expression of the NF-
B inhibitor, I
B
. In an analysis of 28 breast cancer cell lines, I
B
expression was found to be positively correlated with PR mRNA levels. An important role of I
B
as a PR target gene that plays a protective role in the breast was indicated by the finding that overexpression in breast cancer cells of a stable phosphorylation-defective I
B
mutant (21) inhibited COX-2, aromatase, and HER-2/neu. Finally, in breast cancer cell lines cultured in the absence of progesterone, up-regulation of endogenous PR caused decreased expression of aromatase and COX-2 mRNA, whereas down-regulation of endogenous PR caused a marked induction of COX-2, aromatase, and HER-2/neu mRNA. These findings suggest that PR also acts in a ligand-independent manner to antagonize inflammatory response pathways and aromatase in the breast.
| RESULTS |
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B p65 to the Proximal NF-
B Response Element within the COX-2 Promoter in T47D Cells
B p65 to the proximal (–223 bp) NF-
B element of the COX-2 promoter, respectively. T47D cells were cultured in the absence or presence of IL-1β with or without progesterone (100 nM) for 2, 6, or 24 h. qRT-PCR revealed that IL-1β alone caused a marked up-regulation of COX-2 expression whereas cotreatment with progesterone abrogated this effect (Fig. 3A
B response element, with maximal binding after 2 h of incubation (Fig. 3B
B response element at all time points examined. Similar effects of IL-1β and progesterone on in vivo NF-
B p65 binding to the distal (–447 bp) NF-
B response element of the COX-2 promoter were also observed (data not shown). As reported previously (20), ChIP using nonimmune IgG or blank controls in place of p65 IgG, yielded essentially undetectable (Ct value >34 cycles) PCR products at all time points examined (data not shown). In addition to impairing the in vivo binding of p65 to the COX-2 promoter, progesterone inhibited (
50%) IL-1β stimulation of nuclear p65 levels after 2 h and 6 h of incubation (Hardy, D. B., C.-C. Chien, and C. R. Mendelson, unpublished observations). These findings suggest that progesterone/PR antagonizes IL-1β induction of COX-2 expression, in part, by inhibiting NF-
B activation and nuclear translocation.
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B Inhibitor, I
B
, May Serve as a PR Target Gene that Partially Mediates the Progesterone/PR Antiinflammatory Effects in Breast Cancer Cells
B p65 binding to the NF-
B response elements of the COX-2 promoter in breast cancer cells, we analyzed the relationship of expression levels of the NF-
B inhibitor, I
B
, with expression of PR mRNA in human breast cancer cell lines. I
B
expression is induced by glucocorticoids (23, 24, 25, 26) and by progestins (20, 27, 28) in a cell type- and promoter-specific manner. As can be seen in Fig. 4A
B
mRNA with expression of PR and glucocorticoid receptor (GR) mRNA in 28 breast cancer cell lines, there was a significant correlation between the expression of both nuclear receptors and the NF-
B inhibitor. There was no relationship between the relative expression of GR and PR in these breast cancer cell lines. Moreover, as shown in Fig. 4
B
mRNA and protein, respectively, were induced by progesterone after 2–24 h in cultured T47D cells, a GR-deficient cell line (29).
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B transactivation of COX-2 via induction of I
B
; this, in turn, inhibits aromatase and HER-2/neu expression. To further define the role of endogenous NF-
B in the IL-1β and cAMP induction of COX-2, aromatase, and HER-2/neu, T47D cells were infected with a recombinant adenovirus expressing a phosphorylation-defective form of I
B
in which the I
B kinase serine phosphorylation sites (S32 and S36) were mutated (21), or with a recombinant adenovirus containing cytomegalovirus (CMV):βgal, as a control. This mutant form of I
B
, which is resistant to degradation by the ubiquitin/proteasome pathway, sequesters p65/p50 complexes within the cytoplasm, blocking NF-
B activation. Overexpression of the I
B
mutant (
10-fold) was confirmed by qRT-PCR (data not shown). As can be seen in Fig. 5
B
mutant inhibited cAMP and IL-1β induction of COX-2, aromatase, and HER-2/neu mRNA, as compared with cells infected with the recombinant adenovirus containing CMV:βgal. It should be noted that the effect of the I
B
mutant on COX-2 expression was examined after 6 h of IL-1β and cAMP treatment, whereas effects on aromatase and HER-2/neu were studied after 24 h because these are the times at which maximal hormonal stimulation of each of these gene products was observed. Together, these findings suggest that I
B
plays an important mediatory role in the progesterone-induced inhibition of COX-2, aromatase, and HER-2/neu expression.
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40% by densitometry analysis relative to β-actin; Fig. 7A
60% by densitometric analysis; Fig. 7A
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| DISCUSSION |
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IL-1β stimulation of aromatase in breast cancer cells may be mediated by products of the cyclooxygenase pathway that activate adenylyl cyclase and increase cAMP (e.g. PGE2). In previous studies using human breast adipose stromal cells, PGE2 (which acts through cAMP and other second messengers depending upon the PGE2 receptor subtypes that are present) was found to cause a pronounced stimulation of aromatase activity, whereas, PGF2
(acting through Ca2+ and protein kinase C) did not (5). In the present study, we observed that IL-1β or cAMP stimulation of aromatase and HER-2/neu expression in T47D cells was blocked by the cyclooxygenase inhibitor, indomethacin. Moreover, PGE2 markedly stimulated aromatase expression in the T47D cells. These findings suggest that the stimulatory effects of IL-1β or cAMP on aromatase and HER-2/neu expression are mediated, in part, by the induction of COX-2 and prostaglandin production. IL-1β stimulation of aromatase also may be mediated directly by NF-
B, which has been reported to bind to the CYP19 IIa promoter to activate aromatase expression in ovarian granulosa cells (34). The IL-1β- and cAMP-induced effects on HER-2/neu expression in T47D cells provides further support for the positive feedback relationship between COX-2, aromatase, and HER-2/neu in breast cancer (10, 11, 35).
The role of progesterone and PR in the development and pathogenesis of breast cancer is unclear. On the one hand, progesterone/PR treatment of human breast cancer cell lines has been found to cause a rapid and transient increase in cell proliferation through up-regulation of MAPK signaling and cell cycle progression (36). Furthermore, clinical findings of the Womens Health Initiative (WHI) indicated that hormone replacement therapy using estrogen + progesterone significantly increased breast cancer risk, as compared with use of estrogen alone (37). However, it should be emphasized, that the design of the WHI has been criticized because the majority of women in the study were in their 60s and 70s without ever having received prior hormone replacement therapy. Moreover, the progestin was administered in a continuous, rather than a cyclic, manner (38).
On the other hand, as mentioned, the presence of PR in a breast tumor has been found to serve as an independent predictor for benefit from adjuvant endocrine therapy and of disease-free survival (12, 13, 14). Breast tumors that are PR(–) have a higher proliferation rate and are more likely to manifest increased expression of the tumorigenic prognostic indicators, HER-2/neu and epidermal growth factor receptor, than PR(+) tumors (15, 16, 17, 18). In postmenopausal women with advanced or metastatic breast cancer that had progressed during tamoxifen therapy, medroxyprogesterone acetate decreased disease progression (39, 40, 41, 42). In addition, in postmenopausal women with early stage (I–IIB) breast cancer, medroxyprogesterone acetate significantly decreased the recurrence rate after a median follow-up of 37 months (43). Moreover, using clinical data obtained from breast tumor specimens at University of Texas Southwestern, we recently observed that PR expression levels serve as an important predictor for a lower stage of breast cancer at diagnosis, a measure of breast tumor progression (44).
In light of our recent findings that PR acts in a ligand-dependent and -independent manner to inhibit NF-
B activation and COX-2 expression in breast cancer and myometrial cells (20), it was our objective in the present study to further examine the molecular mechanisms underlying the antiinflammatory properties of PR on NF-
B and to characterize downstream effects on two genes previously linked to inflammation and the pathogenesis of breast cancer, aromatase and HER-2/neu. We observed that, similar to its effects on COX-2, progesterone treatment caused a pronounced inhibition of aromatase and HER-2/neu expression in T47D cells. It is likely that progesterone/PR exerts these effects through its action to inhibit expression of COX-2 and the synthesis of PGE2 and other prostanoids that mediate increased cAMP formation. It also is possible that progesterone/PR may prevent activation and/or binding of stimulatory transcription factors to the promoters of the CYP19 (34) and HER-2/neu genes.
To begin to elucidate the mechanisms for the inhibitory effects of progesterone on COX-2, we evaluated temporal effects on COX-2 mRNA expression and on the in vivo binding of NF-
B to the COX-2 promoter in T47D cells. Whereas progesterone alone had no effect, it acutely inhibited IL-1β induction of in vivo binding of NF-
B to the COX-2 promoter and of COX-2 expression. A similar inhibitory effect of progesterone on COX-2 expression and p65 binding to the COX-2 promoter was previously observed in cultured human myometrial cells (20). The effect of progesterone to inhibit p65 DNA binding is likely mediated by ligand-dependent and -independent mechanisms.
In support of previous studies of human myometrial (20), breast cancer (27), and macrophage (28) cell lines, we observed in the present study that PR acted in a ligand-dependent manner to inhibit NF-
B activation by increasing expression of I
B
. As a consequence of increased I
B
expression, more NF-
B is likely sequestered in an inactive state in the cytoplasm. In this regard, we observed that IL-1β increased nuclear levels of p65 in T47D cells after 6 h of treatment; this stimulatory effect of IL-1β was antagonized by coincubation with progesterone (Hardy, D. B., C.-C. Chien, and C. R. Mendelson, unpublished observations).
However, given that the greatest induction of I
B
protein by progesterone occurred approximately 4 h after its marked inhibitory effect on COX-2 mRNA and NF-
B binding were observed, progesterone may also cause acute impairment of NF-
B activation (i.e. via decreases in phosphorylation or direct interaction of PR with NF-
B) to decrease inflammatory processes. On the other hand, long-term antiinflammatory effects are likely sustained by increases in I
B
. To begin to evaluate the relationship between PR and I
B
in human breast tumors, we analyzed PR and I
B
mRNA levels in 28 human breast cancer cell lines using qRT-PCR. The analysis revealed a strong correlation between PR and I
B
mRNA expression in the cell lines, indicating that I
B
may be an important PR-target gene that prevents local inflammatory processes in breast tumors. Whereas the expression levels of GR were not associated with PR and were lower overall than PR in these breast cancer cells [based on high cycle time (Ct) values in qRT-PCR], there also was a striking correlation between GR and I
B
, suggesting that the presence of either of these nuclear receptors could play a protective, antiinflammatory role by increasing I
B
levels.
To directly test the potential inhibitory action of I
B
on expression of COX-2, aromatase, and HER-2/neu, we examined the effects of overexpressing a phosphorylation-defective, stable mutant form of I
B
(21) in cAMP- and IL-1-treated breast cancer cells. We observed that overexpression of this stable I
B
mutant suppressed both cAMP and IL-1β induction of all three genes, suggesting that NF-
B mediates the stimulatory effects of cAMP and IL-1β on COX-2, aromatase, and HER-2/neu expression. Interestingly, the protein kinase A catalytic subunit is maintained in an inactive state in the cytoplasm as a complex with I
B and NF-
B. Signals that cause degradation of I
B result in the activation of protein kinase A catalytic subunit, which in turn catalyzes phosphorylation and transcriptional activation of NF-
B (45).
PR can also exert its antiinflammatory actions in a ligand-independent manner by interacting directly with p65 to block its transcriptional activation and DNA binding (46). Upon knockdown of PR-A and PR-B in T47D cells using siRNA technology, we previously observed that COX-2 mRNA levels were induced more than 30-fold as compared with control cells; this effect was evident in the absence of added progesterone (20). In light of the inhibitory effects of progesterone/PR on IL-1β and cAMP induction of aromatase and HER-2/neu in breast cancer cells, we also wanted to examine ligand-independent actions of PR on expression of these target genes. siRNAs specific for PR-B and for PR-A plus PR-B were used to determine which PR subtype(s) mediates inhibition of aromatase and HER-2/neu in T47D cells. Whereas siRNA directed against PR-B alone had no apparent effect on basal expression of aromatase and HER-2/neu, complete knockdown of both PR-A plus PR-B markedly enhanced the expression of both aromatase and HER-2/neu genes. These effects were associated with increased NF-
B p65 nuclear translocation and COX-2 expression (20). The finding that siRNA-induced knockdown of PR-B alone had no effect to alter COX-2, CYP19, and HER-2/neu expression suggests either that the inhibitory action is specifically mediated by PR-A or that ablation of both PR isoforms is required. It is important to note that these effects were observed in the absence of progesterone, suggesting that PR exerts a hormone-independent effect to inhibit COX-2, CYP19, and HER-2/neu expression. A similar pronounced induction of COX-2 mRNA was observed in T47D cells transfected with an antigene nucleic acid that blocked PR transcription (47).
Conversely, when PR expression was up-regulated in MCF-7 cells [which normally express relatively low levels of PR (30)] by transfection of RNA duplexes complementary to –11 to +8 bp of the PR promoter (31), a reduction of CYP19 mRNA was observed, along with a decrease HER-2/neu and COX-2 expression. The decrease in COX-2 mRNA by overexpression of PR is consistent with previous studies (31). In addition to its important antiinflammatory properties, our recent findings suggest that PR may play an important role in the control of tumor malignancy; ablation of PR expression in T47D cells caused increased expression of the cytoskeletal protein, ezrin (47), which has been found to be associated with tumor metastasis (48).
In conclusion, our findings suggest that the PR may play an important antiinflammatory role in breast cancer cells as an inhibitor of COX-2, aromatase, and the oncogenic growth factor HER-2/neu. In the normal premenopausal breast, we propose that PR may exert these actions via ligand-dependent mechanisms involving up-regulation of the NF-
B inhibitor I
B
, resulting in decreased NF-
B activation and binding to the COX-2 promoter. This results in decreased prostaglandin production and intracellular cAMP and reduced aromatase and HER-2/neu expression. PR also may inhibit NF-
B transcriptional activity in a ligand-independent manner through its physical interaction with NF-
B p65 (46). It is tempting to speculate that this may provide an important protective mechanism in premenopausal women during phases of the menstrual cycle when circulating progesterone levels are low, as well as postmenopausally when circulating levels of progesterone are negligible. Thus, in breast cancer, when PR expression and/or function may be diminished, NF-
B activity increases, culminating in enhanced expression of these proinflammatory genes and, ultimately, in increased local estrogen production with enhanced tumor growth and progression. Our findings further suggest that measures to up-regulate endogenous PR expression in the absence of ligand may serve as an important therapeutic modality for preventing breast tumor progression.
| MATERIALS AND METHODS |
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Tritiated Water Assay of Aromatase Activity in MCF-7 Cells
MCF-7 cells were coincubated for 24 h with 2 µCi of [1β-3H]androst-4-ene-3,17-dione (39.5 nM; NEN Life Science Products, Boston, MA) in the absence or presence of IL-1β (10 ng/ml) or Bt2cAMP (1 mM) ± progesterone (100 nM). Aromatase activity was assayed by quantifying the release of tritium from [1β-3H]androstenedione and its incorporation into water, as described in detail previously (49). The cells were washed, scraped from the dishes, and analyzed for protein (50). Aromatase activity was expressed as femtomoles of [1β-3H]androstenedione metabolized to estrogen/h/mg protein (fmol/h/mg). Aromatase activity of MCF-7 cells cultured in serum-free medium in the absence of hormones was approximately 6.25 fmol/h/mg of protein. Effects of hormonal treatment on aromatase activity are presented relative to untreated control values.
qRT-PCR
Total RNA from T47D, MCF-7, and 26 other breast cancer cell lines was extracted by the one-step method of Chomczynski and Sacchi (51) (TRIzol; Invitrogen, Carlsbad, CA). The 26 breast cancer cell lines were derived from primary breast cancer biopsies at the Harold C. Simmons Comprehensive Cancer Center and were kindly donated by Dr. John Minna at University of Texas Southwestern Medical Center. RNA was treated with deoxyribonuclease to remove any contaminating DNA, and 4 µg were reverse transcribed using random primers and Superscript II ribonuclease H-reverse transcriptase (Invitrogen). Primer sets directed against human tissue-specific CYP19 mRNA transcripts, along with COX-2, PR, GR, I
B
, HER-2/neu, and rRNA (h36B4) were generated utilizing Primer Express software (PE Applied Biosystems, Foster City, CA) based on published sequences (Table 1
).
The relative abundance of each RNA transcript was determined by qRT-PCR using the ABI Prism 7700 Detection System (Applied Biosystems, Foster City, CA) and the DNA-binding dye SYBR Green (PE Applied Biosystems) for the detection of PCR products as described in detail previously (20, 52). Relative fold changes were calculated using the comparative cycle times (Ct) method with rRNA (h36B4) as the reference guide. Over a wide range of known cDNA concentrations, all primer sets were demonstrated to have good linear correlation (slope = –3.4) and equal priming efficiency for the different dilutions compared with their Ct values (data not shown). The relative abundance of each primer set compared with calibrator was determined by the formula, 2
Ct, whereby 
Ct is the calibrated Ct value (primer – internal control).
ChIP
T47D breast cancer cells were cultured for 2–24 h in serum-free medium, in the absence or presence of IL-1β (10 ng/ml), progesterone (100 nM), or the two hormones in combination. ChIP was performed using antibody to NF-
B p65 (Santa Cruz Biotechnology, Inc., Santa Cruz, CA) to assess hormonal effects on its in vivo binding to the proximal and distal NF-
B response elements of the human COX-2 gene, as described previously (20). Briefly, T47D cells (3 x 107 cells per treatment) were washed once with PBS and incubated with 1% formaldehyde (in control medium) for 10 min at room temperature to cross-link proteins and DNA. Cross-linking was terminated by the addition of glycine (0.125 M, final concentration). The cells were washed twice with cold PBS and placed in 500 µl of lysis buffer [50 mM Tris (pH 8.1), 150 mM NaCl, 1% Triton X-100, 0.1% sodium dodecyl sulfate (SDS), protease inhibitor cocktail (Roche, Indianapolis, IN), and 5 mM EDTA]. The lysates were sonicated on ice to produce sheared, soluble chromatin. The soluble chromatin was precleared with Protein A/G Plus agarose beads (60 µl) at 4 C for 1 h. The samples were microfuged at 14,000 rpm to pellet the beads, and the supernatant containing the sheared chromatin was placed in new tubes. The precleared chromatin was aliquoted into 300-µl amounts and incubated with antibodies for p65 (Santa Cruz) at 4 C overnight. Two aliquots were reserved as controls: one incubated without antibody and the other with nonimmune IgG. Protein A/G Plus agarose beads (60 µl) were added to each tube, the mixtures were incubated for 2 h at 4 C, and the immune complexes were collected by centrifugation. The beads containing the immunoprecipitated complexes were washed sequentially for 5–10 min in wash buffer I (20 mM Tris-HCl, pH 8.1; 2 mM EDTA; 0.1% SDS; 1% Triton X-100; 150 mM NaCl), wash buffer II (same as I, except containing 500 mM NaCl), wash buffer III (10 mM Tris-HCl, pH 8.1; 1 mM EDTA; 1% Nonidet P-40; 1% deoxycholate; 0.25 M LiCl), and in 2x Tris-EDTA buffer. The beads were eluted with 250 µl elution buffer (1% SDS, 0.1 mM NaHCO3 + 20 µg salmon sperm DNA (Sigma) at room temperature. This was repeated once and eluates were combined. Cross-linking of the immunoprecipitated chromatin complexes and input controls (10% of the total soluble chromatin) was reversed by heating the samples at 65 C for 4 h. Proteinase K (15 µg, Invitrogen) was added to each sample in buffer (50 mM Tris-HCl, pH 8.5; 1% SDS; 10 mM EDTA) and incubated for 1 h at 45 C. The DNA was purified by phenol-chloroform extraction and precipitated in EtOH overnight at –20 C. Samples and input controls were diluted in 10–100 µl Tris-EDTA buffer just before PCR. Real-time PCR was employed using forward (5'-TAAAACATGTCAGCCTTT-CTTAACCTT-3') and reverse (5'-CGGCCCTGAGGTCCG-3') primers that amplify an approximately 100-bp region surrounding the proximal NF-
B response element, and forward (5'-GGAGGAGAGGGAGGGATC-AG-3') and reverse (5'-TGCCCCAATTTGG-GAGC-3') primers surrounding the distal NF-
B response element of the COX-2 promoter. Using serial dilutions of human chromosomal DNA, these primers were demonstrated to have equal efficiency in priming their target sequences.
Infection of Type II Cells with Recombinant Adenoviruses
T47D cells were infected with recombinant adenoviruses expressing a phosphorylation-defective form of I
B
in which the I
B kinase serine phosphorylation sites (S32 and S36) were mutated (21), or with a recombinant adenovirus containing CMV:β-Gal, as a control. Adenoviral infection was carried out as described previously (53). Briefly, the cells were incubated for 3 h with recombinant adenoviruses expressing either the mutant I
B
(CMV:I
B
mut) [multiplicity of infection (m.o.i.) = 5] or with CMV:β-Gal (m.o.i. = 5). The cells were then washed and incubated in the absence or presence of IL-1β (10 ng/ml) or cAMP (1 mM) for either 6 or 24 h.
Double-Stranded siRNAs and Antigene RNAs (agRNAs)
In previous studies, we observed that transfection of T47D breast cancer cells with siRNAs specific for PR-A and PR-B, which abrogated expression of these PR isoforms, caused a greater than 30-fold increase in COX-2 mRNA levels (20). Furthermore, it was found that a duplex agRNA complementary to the PR promoter sequence from –11 to +8 (PR11) caused a marked increase in PR-A and PR-B mRNA in MCF-7 breast cancer cells, whereas a mismatch duplex agRNA had no effect (31). These technologies were used in the present study to analyze the effects of altering endogenous PR on expression of aromatase, COX-2, and HER-2/neu. Twenty-one nucleotide siRNAs were synthesized by Integrated DNA Technologies (Coralville, IA). Oligonucleotides contained two 2'-deoxythymidine on the 3'-end were deprotected and desalted. Sequences are listed in Table 1
and identified relative to the transcription start site as described (PR: GenBank entry NM_000926). Duplex RNAs were made and melting temperatures of the duplexes measured as previously described (47).
Lipid-Mediated Transfection of RNA Duplexes
RNA duplexes were introduced into cells as previously described (20). Cells were plated 2 d before transfection at 200,000 cells per well in six-well plates (Costar, Cambridge, MA) without antibiotics. Transfections with agRNA or siRNAs were performed using Oligofectamine (Invitrogen) following the manufacturers instructions. Briefly, duplex RNA was mixed with oligofectamine in Optimem (Invitrogen) and added to the cells to a final concentration of 100 nM. Media were changed 24 h later, and cells were harvested 5 d after transfection for Western analysis or qRT-PCR.
Preparation of Cell Lysates and Nuclear Extracts and Immunoblot Analysis
T47D and MCF-7 cell cytoplasmic and nuclear extracts were prepared as described previously (52). Nuclear and cytoplasmic proteins were fractionated in gradient polyacrylamide gels (Invitrogen) and transferred onto Hybond-P (Amersham Pharmacia Biotech, Piscataway, NJ). Blots were probed using rabbit antibodies for PR (Cell Signaling Technology, Danvers, MA), which recognize PR-A and PR-B, diluted at 1:500 in 5% milk-Tris-buffered saline-Tween 20 buffer and with horseradish peroxidase-conjugated goat antirabbit IgG (1:10,000) diluted in 5% milk-Tris-buffered saline-Tween 20 buffer (Amersham Pharmacia) as secondary antibody. Rabbit antibodies raised against human HER-2/neu (Cell Signaling Technology, Inc., Danvers, MA; 1:1000), COX-2 (Cayman Chemicals, 1:500), and I
B
(Santa Cruz Biotechnology, 1:1000) were also employed for analysis of HER-2/neu, COX-2, and I
B
protein, respectively. Immunoreactive bands were visualized using an enhanced chemiluminescence detection system (Amersham Pharmacia); the relative abundance of each protein was analyzed by densitometry and compared with the corresponding levels of glyceraldehyde-3-phosphate, tubulin, or β-actin.
Statistics
For the majority of the experiments using qRT-PCR and ChIP, the data are expressed as the mean of arbitrary values ± SEM. The significance of differences (P < 0.05) between mean values was evaluated using the unpaired Students t test.
| ACKNOWLEDGMENTS |
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B
with mutations in the I
B kinase
phosphorylation sites. | FOOTNOTES |
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Disclosure Statement: None of the authors has anything to declare regarding potential conflicts of interest.
First Published Online May 15, 2008
Abbreviations: agRNA, Antigene RNA; Bt2cAMP, dibutyryl cAMP; ChIP, chromatin immunoprecipitation; CMV, cytomegalovirus; COX-2, cyclooxygenase 2; Ct, cycle time; ER, estrogen receptor; GR, glucocorticoid receptor; m.o.i., multiplicity of infection; NF-
B, nuclear factor
B; PGE2, prostaglandin E2; PR, progesterone receptor; qRT-PCR, quantitative real-time RT-PCR; SDS, sodium dodecyl sulfate; siRNA, small interfering RNA.
Received for publication September 25, 2007. Accepted for publication May 6, 2008.
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