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This version published online on August 10, 2006
Molecular Endocrinology, doi:10.1210/me.2006-0126
A more recent version of this article appeared on December 1, 2006
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Submitted on March 20, 2006
Accepted on August 1, 2006

ROLE OF CHROMATIN ACCESSIBILITY IN THE OCCUPANCY AND TRANSCRIPTION OF THE INSULIN GENE BY THE PANCREATIC TRANSCRIPTION FACTOR PDX-1

Joshua Francis, Daniella A. Babu, Tye G. Deering, Swarup K. Chakrabarti, James C. Garmey, Carmella Evans-Molina, David G. Taylor, and Raghavendra G. Mirmira*

Department of Pharmacology and Department of Medicine and the Diabetes Center, University of Virginia, Charlottesville, VA 22908

* To whom correspondence should be addressed. E-mail: mirmira{at}virginia.edu.

Pdx-1 is a hox-like transcription factor that is responsible for the activation of insulin gene. Prior studies have demonstrated the interaction in vitro of Pdx-1 with short (20-40 nucleotide) DNA fragments corresponding to "A boxes" of the insulin promoter. Precisely how Pdx-1 binds to DNA in the complex milieu of chromatin, however, has never been studied. Here, we explored how Pdx-1-DNA interactions might be influenced by chromatin accessibility at the insulin gene in {beta} cells ({beta}TC3) vs. pancreatic ductal cells (mPAC). We demonstrate that Pdx-1 occupies the endogenous insulin promoter in {beta}TC3 cells but not in mPAC cells, a finding that is independent of the intracellular Pdx-1 protein concentration. Based on micrococcal nuclease protection assays, the difference in promoter binding between the two cell types appears to be secondary to chromatin accessibility at predicted Pdx-1 binding sites between bp -126 to -296 (relative to the transcriptional start site) of the insulin promoter. Binding studies using pruified Pdx-1 and reconsituted chromatin in vitro suggest that the positioning of a nucleosome(s) within this crucial region of the promoter might account for differences in chromatin accessibility. Consistent with these observations, fluorescence colocalization studies show that Pdx-1 does not occupy regions of compacted, nucleosome-rich chromatin within the nucleus. Our findings suggest a model whereby insulin transcription in the {beta} cell is at least partially facilitated by enahanced chromatin accessibility within a crucial regulatory region between bp -126 to -296, thereby permitting occupancy by transactivators such as Pdx-1.




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